PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN21941.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRAS

Protein Properties

Length: 614aa MW: 70203.2 Da PI: 6.638

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN21941.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	372.7	4.8e-114	237	611	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lLl c + v ++d++ a++lL+++++++sp gd+ qRla+yf+++L+arl++ +++ + ++++ + +e l+ ++ f +sP+ kf+++ aN KHN21941.1 237 LRNLLLMCSQSVYANDNRTANELLKQIRQHSSPVGDASQRLAHYFANGLEARLVGDGTSSQGMYTFLSSKNITAAEFLKTHQDFMSASPFKKFTYFFAN 335 6899************************************************94444433334444444449999999999************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++I++a+++ e+vHiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p++g +e++ etg+rLa+++++ vpfe+n++++k++e++++e+L++ KHN21941.1 336 KMIMKAAAKVETVHIIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGfrPTEKIDETGRRLANYCKRYSVPFEYNAIASKNWETIRIEALKI 434 *************************************************9**************************99********* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +++E +aVn++ + ++lld+s +++s+r++vL+l+++++P++++ + + ++n++ F+ rf eal +ysa++d +++ ++re+e r ++Erellgrei+ KHN21941.1 435 ESNELVAVNCHQRFENLLDDSIEVNSPRNAVLHLIRKINPNIFTQSITNGSYNAPFFAPRFREALFHYSAIYDLIDTIIHRENERRLMIERELLGREIM 533 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 nv+aceg+er+er et+++W+ r ++aGFk++pl+e+ +++ ++ lrk + + + +e+s++++lgWk+r L++ ++W KHN21941.1 534 NVIACEGSERIERPETYKQWQVRNMKAGFKQLPLDEELMAKFRTELRKWYHRDFVSDEDSNWMLLGWKGRILFASTCW 611 **********************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.602	211	592	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-111	237	611	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence Send to blast
MEENVELEQS PFYDSLTLQV TEKSFYDALA GNLLLSPQAS NTNFSVENSR ELNLPSPDSL 60 SVSALQFNPH ALSQPPPLVN VSEGVSDLDS SIARLLAHNI FNDVDSVSHF RRGFEEASRF 120 LPPGPNLVTA LHSNAQEPIN SFRENSYGLL KGRKNLERQE INTREEERGG RSNKQSAFSF 180 VDESDLSDAI DRVFLSVENV CSEHSSLQSG PLRAEEQDRG KGLSKKQERR KQETVDLRNL 240 LLMCSQSVYA NDNRTANELL KQIRQHSSPV GDASQRLAHY FANGLEARLV GDGTSSQGMY 300 TFLSSKNITA AEFLKTHQDF MSASPFKKFT YFFANKMIMK AAAKVETVHI IDFGILYGFQ 360 WPILIKFLSN REGGPPKLRI TGIEFPQPGF RPTEKIDETG RRLANYCKRY SVPFEYNAIA 420 SKNWETIRIE ALKIESNELV AVNCHQRFEN LLDDSIEVNS PRNAVLHLIR KINPNIFTQS 480 ITNGSYNAPF FAPRFREALF HYSAIYDLID TIIHRENERR LMIERELLGR EIMNVIACEG 540 SERIERPETY KQWQVRNMKA GFKQLPLDEE LMAKFRTELR KWYHRDFVSD EDSNWMLLGW 600 KGRILFASTC WVPA

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence Send to blast

MEENVELEQS PFYDSLTLQV TEKSFYDALA GNLLLSPQAS NTNFSVENSR ELNLPSPDSL  60
SVSALQFNPH ALSQPPPLVN VSEGVSDLDS SIARLLAHNI FNDVDSVSHF RRGFEEASRF  120
LPPGPNLVTA LHSNAQEPIN SFRENSYGLL KGRKNLERQE INTREEERGG RSNKQSAFSF  180
VDESDLSDAI DRVFLSVENV CSEHSSLQSG PLRAEEQDRG KGLSKKQERR KQETVDLRNL  240
LLMCSQSVYA NDNRTANELL KQIRQHSSPV GDASQRLAHY FANGLEARLV GDGTSSQGMY  300
TFLSSKNITA AEFLKTHQDF MSASPFKKFT YFFANKMIMK AAAKVETVHI IDFGILYGFQ  360
WPILIKFLSN REGGPPKLRI TGIEFPQPGF RPTEKIDETG RRLANYCKRY SVPFEYNAIA  420
SKNWETIRIE ALKIESNELV AVNCHQRFEN LLDDSIEVNS PRNAVLHLIR KINPNIFTQS  480
ITNGSYNAPF FAPRFREALF HYSAIYDLID TIIHRENERR LMIERELLGR EIMNVIACEG  540
SERIERPETY KQWQVRNMKA GFKQLPLDEE LMAKFRTELR KWYHRDFVSD EDSNWMLLGW  600
KGRILFASTC WVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-54	226	613	7	379	Protein SCARECROW
5b3h_D	1e-54	226	613	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN21941.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539081.2	0.0	scarecrow-like protein 34
Refseq	XP_028191349.1	0.0	scarecrow-like protein 34
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A0R0HGV4	0.0	A0A0R0HGV4_SOYBN; Uncharacterized protein
STRING	GLYMA11G14710.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]