PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN21939.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRAS

Protein Properties

Length: 605aa MW: 68552.3 Da PI: 6.8886

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN21939.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376.8	2.7e-115	237	603	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL++cA+av+s d++ a+++L+++++++sp+gd +qRla+yf+ +L++rla ++ k ++ +++s ++ l+a++++ +sP+l++s+++aN++ KHN21939.1 237 TLLTQCAQAVASFDQRTANETLKQIRQHSSPYGDGLQRLAHYFADGLEKRLAA---GTPKFISFQSAS---AADMLKAYRVYISASPFLRMSNFLANST 329 69************************************************9...555556666666...899********************* PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 Il+ +++e+ +HiiDf+is+G+QWp+L+q L++Rp+gpp+lR+ g++ p++g +e++eetg+ L+k+++++gvpfe+n +a+++e+++le+L++++ KHN21939.1 330 ILKLAQNESSIHIIDFGISYGFQWPCLIQRLSERPGGPPKLRMMGIDLPQPGfrPAERVEETGRWLEKYCKRFGVPFEYNC-LAQKWETIRLEDLKIDR 427 ***********************************************9*************************.6************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 E+++Vn+ ++l++l de+v+ + +rd++L+l+++++P+++ + + +n++ F++rf eal ++s+lfd++ea++pre+ r ++E+ l+gr++ nv KHN21939.1 428 SEVTVVNCLYRLKNLSDETVTANCPRDALLRLIRRINPNIFMHGIVNGTYNAPFFVTRFREALFHFSSLFDMFEANVPREDPSRLMIEKGLFGRDAINV 526 *********************************************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +acegaer+er et+++W+ r ++aGFk++pl ++ ++ +k +++k + + + v e+ +++++gWk+r L++vS+W+ KHN21939.1 527 IACEGAERVERPETYKQWQVRNQRAGFKQLPLAQEHVNRVKEMVKKEYHKDFVVGEDGKWVLQGWKGRILFAVSSWT 603 ********************************************888***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.324	209	583	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.4E-113	237	603	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
MDEEVDLERK PCMLQDCLRL QAAEKSFYDA LVRSYPSSTG QFNDNPDPDD NFGGTTSSES 60 FSSYTTDNSC ESDWFNGASD LDSSFLQRSL IDSLEHTYVA PDLFRETQAG VHFSNGAWNL 120 IHLQNKPRAI EDGVMRGSVT ATGLREKRSY QMNDISHEEE EKSNKLSAVY LDDSEPSSMF 180 DDVLLCKDGK SPSIFYAGRE PSPSQIADSG GSNGKKTRSK KGSNKRTSAS ATVDLWTLLT 240 QCAQAVASFD QRTANETLKQ IRQHSSPYGD GLQRLAHYFA DGLEKRLAAG TPKFISFQSA 300 SAADMLKAYR VYISASPFLR MSNFLANSTI LKLAQNESSI HIIDFGISYG FQWPCLIQRL 360 SERPGGPPKL RMMGIDLPQP GFRPAERVEE TGRWLEKYCK RFGVPFEYNC LAQKWETIRL 420 EDLKIDRSEV TVVNCLYRLK NLSDETVTAN CPRDALLRLI RRINPNIFMH GIVNGTYNAP 480 FFVTRFREAL FHFSSLFDMF EANVPREDPS RLMIEKGLFG RDAINVIACE GAERVERPET 540 YKQWQVRNQR AGFKQLPLAQ EHVNRVKEMV KKEYHKDFVV GEDGKWVLQG WKGRILFAVS 600 SWTPA

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

MDEEVDLERK PCMLQDCLRL QAAEKSFYDA LVRSYPSSTG QFNDNPDPDD NFGGTTSSES  60
FSSYTTDNSC ESDWFNGASD LDSSFLQRSL IDSLEHTYVA PDLFRETQAG VHFSNGAWNL  120
IHLQNKPRAI EDGVMRGSVT ATGLREKRSY QMNDISHEEE EKSNKLSAVY LDDSEPSSMF  180
DDVLLCKDGK SPSIFYAGRE PSPSQIADSG GSNGKKTRSK KGSNKRTSAS ATVDLWTLLT  240
QCAQAVASFD QRTANETLKQ IRQHSSPYGD GLQRLAHYFA DGLEKRLAAG TPKFISFQSA  300
SAADMLKAYR VYISASPFLR MSNFLANSTI LKLAQNESSI HIIDFGISYG FQWPCLIQRL  360
SERPGGPPKL RMMGIDLPQP GFRPAERVEE TGRWLEKYCK RFGVPFEYNC LAQKWETIRL  420
EDLKIDRSEV TVVNCLYRLK NLSDETVTAN CPRDALLRLI RRINPNIFMH GIVNGTYNAP  480
FFVTRFREAL FHFSSLFDMF EANVPREDPS RLMIEKGLFG RDAINVIACE GAERVERPET  540
YKQWQVRNQR AGFKQLPLAQ EHVNRVKEMV KKEYHKDFVV GEDGKWVLQG WKGRILFAVS  600
SWTPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-50	241	604	25	380	Protein SCARECROW
5b3h_A	3e-50	241	604	24	379	Protein SCARECROW
5b3h_D	3e-50	241	604	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN21939.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539078.1	0.0	scarecrow-like protein 14
Refseq	XP_028190942.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	1e-179	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A445I1M6	0.0	A0A445I1M6_GLYSO; Scarecrow-like protein 14
TrEMBL	I1LK06	0.0	I1LK06_SOYBN; Uncharacterized protein
STRING	GLYMA11G14670.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]