PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN21898.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 28606.3 Da PI: 8.1743 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.7e-05 | 94 | 113 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ KHN21898.1 94 FPCPLCFKTFNRYNNMQMHM 113 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.76E-5 | 90 | 116 | No hit | No description |
PROSITE profile | PS50157 | 9.515 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.2E-6 | 94 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.7E-5 | 160 | 198 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 164 | 198 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEVDKKKKEL SSSSSCLDEE DAAVTVALHL GLPSTSDLAS SSLYSSTEAS SDKEEEEEEV 60 VLTDSSGLLL SNRINRGQYW IPTSSQILIG PTQFPCPLCF KTFNRYNNMQ MHMWGHGSQY 120 RKGPESLRGT QPTAMLRLPC YCCAPGCKNN IDHPRAKPLK DFRTLQTHYK RKHGTKPFVC 180 RKCCKAFAVR GDWRTHEKNC GKRWYCSCGS DFKHKRSLKD HIKAFGYGHT ACGNDRCNLD 240 QDHDDQLVGS EIE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN21898.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095633 | 1e-160 | BT095633.1 Soybean clone JCVI-FLGm-19L21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539062.1 | 0.0 | zinc finger protein WIP2 | ||||
Refseq | XP_028189190.1 | 0.0 | zinc finger protein WIP2-like | ||||
Swissprot | Q8W031 | 1e-116 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | A0A445I0Z6 | 0.0 | A0A445I0Z6_GLYSO; Zinc finger protein WIP5 | ||||
TrEMBL | I1LJV3 | 0.0 | I1LJV3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G14100.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-111 | C2H2 family protein |
Publications ? help Back to Top | |||
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