PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN21891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 559aa MW: 61815.5 Da PI: 6.4724 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.6 | 2e-10 | 168 | 224 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+ ++ a++k++g KHN21891.1 168 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARSYDLAALKYWG 224 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.1 | 6.1e-15 | 269 | 318 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g KHN21891.1 269 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 318 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.11E-18 | 168 | 234 | No hit | No description |
SuperFamily | SSF54171 | 6.47E-14 | 168 | 234 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.1E-8 | 168 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.201 | 169 | 232 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-22 | 169 | 238 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-11 | 169 | 233 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 170 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-18 | 267 | 328 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.92E-24 | 267 | 328 | No hit | No description |
SMART | SM00380 | 8.6E-33 | 268 | 332 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.375 | 268 | 326 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-18 | 268 | 327 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 269 | 318 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 308 | 328 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 559 aa Download sequence Send to blast |
MNNNWLSFPL SPTHSSLPAH DLQATQYHQF SLGLVNENME NPFQNHDWSL INTHSSSEVP 60 KVADFLGVSK SENESDLAAS LNEIQSNDSD YLFTNNSLVP MQNPAVDTPS NEYQENANSS 120 LQSLTLSMGS GKDSTCETSG DNSTNTTTTT TVEAAPRRTL DTFGQRTSIY RGVTRHRWTG 180 RYEAHLWDNS CRREGQSRKG RQGGYDKEEK AARSYDLAAL KYWGTSTTTN FPISNYEKEL 240 DEMKHMTRQE FVAAIRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS 300 TEEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKAILESNT LPIGGGAAKR LKEAQALESS 360 RKREEMIALG SSTFQYGTTS SNSRLHAYPL MQHHHQFEQP QPLLTLQNHD ISSHFSHQQD 420 PLHQGYIQTQ LQLHQQQSGG SSSYSFQNNN INNAQFYNGY NLQNHPALLQ GMINMGSSSS 480 SSVLENNNSN NNNVGGFVGS GFGMASNATS GNTVGTAEEL GLVKVDYDMP TGGYGGWSAA 540 AAAESMQTSN SGVFTMWND |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN21891.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU677381 | 0.0 | EU677381.1 Glycine max PLETHORA 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006590237.1 | 0.0 | PLETHORA 2 isoform X2 | ||||
Refseq | XP_006590238.1 | 0.0 | PLETHORA 2 isoform X2 | ||||
Refseq | XP_028188571.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Refseq | XP_028188572.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A0R0HGL2 | 0.0 | A0A0R0HGL2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G14040.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4942 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G20840.1 | 0.0 | AP2 family protein |