PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN21885.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 418aa MW: 45976.7 Da PI: 6.3537 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.4e-13 | 352 | 397 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L +AveYIk+Lq KHN21885.1 352 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVEYIKDLQ 397 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.186 | 346 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-17 | 349 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.22E-14 | 350 | 401 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.1E-16 | 351 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 352 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-14 | 352 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MESDLQQHPP MFLDHHQQQM NSGLTRYRSA PSSYFSSIID HEFYEHVFNR PSSPETERML 60 TRFVNSLGGG DADAEDSLAT TQNPPTVVAV KEEVNQQPPD VTSMNNEPLV LQQQQQQQQQ 120 QQQSNNMYNY GSSGTQNFYQ STGRPPLPNQ MKTGHGSSSN LIRHGSSPAG LFSNINIDIT 180 GYAAVVRGMG TMGAAANNTS EEANFSPATR MKNNAPNFSS GLMSSRAEVG NKSNTQNNNA 240 ENEGFAESQG NEFIPAGFPV GPWNDSAIMS DNVTGLKRFR DEDVKPFSGG LNAPESQNET 300 GGQQPSSSAL AHQLSLPNTS AEMAAIEKFL QLSDSVPCKI RAKRGCATHP RSIAERVRRT 360 KISERMRKLQ DLVPNMDKQT NTADMLDLAV EYIKDLQNQV QTLSDNRAKC TCSHKKQQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN21885.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031118 | 0.0 | KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537954.1 | 0.0 | transcription factor bHLH122 | ||||
Refseq | XP_006590956.1 | 0.0 | transcription factor bHLH122 | ||||
Refseq | XP_006590957.1 | 0.0 | transcription factor bHLH122 | ||||
Refseq | XP_014619508.1 | 0.0 | transcription factor bHLH122 | ||||
Refseq | XP_028190044.1 | 0.0 | transcription factor bHLH122-like | ||||
Refseq | XP_028190045.1 | 0.0 | transcription factor bHLH122-like | ||||
Refseq | XP_028190046.1 | 0.0 | transcription factor bHLH122-like | ||||
Refseq | XP_028190047.1 | 0.0 | transcription factor bHLH122-like | ||||
TrEMBL | A0A445I1E2 | 0.0 | A0A445I1E2_GLYSO; Transcription factor bHLH122 isoform A | ||||
TrEMBL | I1LJT5 | 0.0 | I1LJT5_SOYBN; BHLH transcription factor | ||||
STRING | GLYMA11G13960.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4185 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 8e-83 | bHLH family protein |
Publications ? help Back to Top | |||
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