PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN21563.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CO-like | ||||||||
Protein Properties | Length: 366aa MW: 40844.4 Da PI: 5.1419 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24 | 7.9e-08 | 12 | 55 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + ++++fC ++ +lC+ C + H+ H++v KHN21563.1 12 ARACDSCVSRRARWFCAADDAFLCHGCDTLVHSAnqlasrHERV 55 578*****************************657788888876 PP | |||||||
2 | CCT | 66.9 | 5.7e-23 | 311 | 353 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ KHN21563.1 311 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 353 9****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.424 | 10 | 57 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.9E-9 | 10 | 57 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-6 | 12 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.03E-8 | 13 | 57 | No hit | No description |
Pfam | PF06203 | 8.0E-18 | 311 | 353 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.993 | 311 | 353 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MKDAGALGGK TARACDSCVS RRARWFCAAD DAFLCHGCDT LVHSANQLAS RHERVRLQTA 60 SSKVTTTHAW HSGFTRKART PRHNSKHFAL QQRLKDEVLF NNTSVLPLVP ELGGEEQEPV 120 VVDNDETEEQ MLCRVPVFDP FDVRTDDLDS FSDMDFAEFA ADVESLLDKE DDEISACVGG 180 GEGEGEGVQG AMVKVKDEEE IDGDVACYLE SVFDDAFHWN NIESVLSDAR EEKEGVVACD 240 VGVGDEEGGT KRDIFLRLNY DEVITAWSSQ GSSPWTTSNP PKFNSDYDFS LGLSGVGGEV 300 RSLRGHLDGG REARVSRYRE KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF VKRTCFVGAN 360 AFPAYH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 321 | 337 | RRTRLFAKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN21563.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ864265 | 0.0 | GQ864265.1 Glycine max CONSTANS-like zinc finger protein (COL11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028233901.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16-like | ||||
Swissprot | Q8RWD0 | 2e-85 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A445KSM0 | 0.0 | A0A445KSM0_GLYSO; Zinc finger protein CONSTANS-LIKE 16 | ||||
STRING | GLYMA05G35151.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 4e-88 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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