PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN21530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 39939.6 Da PI: 7.361 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.8 | 1.5e-51 | 13 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 ppGfrFhP+deel+v+yL++k+++++l++ ++i+e+++yk++Pw+Lp+k +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ +++ KHN21530.1 13 PPGFRFHPSDEELIVHYLQNKISSRPLPA-SIIAEINLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSScGSKR 110 9****************************.89***************8777899***************************************988889 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy+gr pkg ktdW+m+eyrl KHN21530.1 111 IGVKKALVFYSGRPPKGAKTDWIMNEYRL 139 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-62 | 9 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.693 | 12 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-26 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEGDQQGSNY SFPPGFRFHP SDEELIVHYL QNKISSRPLP ASIIAEINLY KYNPWELPNK 60 SLFGEEEWYF FSPRDRKYPN GLRPNRAAAS GYWKATGTDK PILSSCGSKR IGVKKALVFY 120 SGRPPKGAKT DWIMNEYRLV DTITTSSRLK GSMRLDDWVL CRVRHKGYSP KNSCENQESP 180 NELNLSAKLP RSEEYPTNMN CRADMIPDYQ YKDYQIIASI LVGGPIPPTE SMPNLSFKGC 240 KGNNVVSVYE DDFTKVNSQA TIPSLESYFN PLTRKSSEDE QYGNLISFNR KFNTENRMDG 300 STSKVLTSRE LNCYNQNQSQ DDIFNVNPPD PSINFQELNE LDFSGRYHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-68 | 8 | 166 | 16 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-68 | 8 | 166 | 16 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-68 | 8 | 166 | 16 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-68 | 8 | 166 | 16 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-68 | 8 | 166 | 16 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-68 | 8 | 166 | 16 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-68 | 8 | 166 | 16 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-68 | 8 | 166 | 16 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN21530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541998.1 | 0.0 | NAC domain-containing protein 68 | ||||
Refseq | XP_028189374.1 | 0.0 | NAC domain-containing protein 68-like | ||||
Swissprot | A2YMR0 | 2e-79 | NAC10_ORYSI; NAC transcription factor ONAC010 | ||||
TrEMBL | A0A445IDE3 | 0.0 | A0A445IDE3_GLYSO; NAC transcription factor ONAC010 | ||||
TrEMBL | K7M378 | 0.0 | K7M378_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G40251.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-81 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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