PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21512.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 327aa    MW: 36054.5 Da    PI: 8.6597
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21512.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19241274134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  KHN21512.1 241 CMHCEVTKTPQWREGPVGPKTLCNACGVRYRSGR 274
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.28E-14234296No hitNo description
PROSITE profilePS5011411.688235271IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16235285IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14239272IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.63E-15240287No hitNo description
PfamPF003204.2E-17241274IPR000679Zinc finger, GATA-type
PROSITE patternPS003440241266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSKDIANMKD SWFFDNNFNG LSDEIFDDVI NFFDFPLEDV EANGVEEDWD AQLKCLEDPR  60
VDVYTASSAG LCAKTQNEKP QLGMKFSASG NGISPIKQLG KAPGPVYGKT ITHQNVTSNG  120
KDLHQFQTYT YSPVSVFESS SSSSVENSNF DRPVIPVKRA RSKRQRPSSF SPLFSIPFIL  180
NSPAMQNHQR IAAADSDFGT NVAGNLSNKL KKQKKKDSSL LSDDVEMMRS SSPESGSPRK  240
CMHCEVTKTP QWREGPVGPK TLCNACGVRY RSGRLFPEYR PAASPTFVAS LHSNCHKKVV  300
EMRSRAIQEP VRGSMLASSN LHGNAVG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21512.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992130.0BT099213.1 Soybean clone JCVI-FLGm-23B6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028191330.10.0GATA transcription factor 11-like isoform X1
TrEMBLA0A445ID530.0A0A445ID53_GLYSO; GATA transcription factor 11 isoform A
STRINGGLYMA13G40020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-44GATA transcription factor 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]