PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21458.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 306aa    MW: 33084 Da    PI: 4.5317
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21458.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05281303223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+ksF++ s L++H +  H
  KHN21458.1 281 SCKTCSKSFTNESGLQQHNKAkH 303
                 7*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.79E-5268302No hitNo description
PROSITE profilePS5015712.154280306IPR007087Zinc finger, C2H2
SMARTSM003550.0083280303IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280282303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEFWGAEVKV GESVKVDPAE FEACIHLSQA ALGEAKKDKP EPVVLYMKVG EQKFVLGTLS  60
REKIPQISLE LVLEKEFELS HSSKSASVHF CGYKAYYDAD NSDEDEFTDS DEDDEDVPLI  120
NTENGKPETK AEDLKVPESK KAVAKASGSA KQVKVVEPKK DNEEDSDDDS DDDDFGSSDE  180
EMEDADSDSD DESGDEDDDE ETPPKKVDLG KKRPNESASK TPVSSKKAKN ATPEKTDGKK  240
GGHTATPHPA KKGGKTPNSE AKAKTPNSEA KAKTPKSGGL SCKTCSKSFT NESGLQQHNK  300
AKHGGQ
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968030.0BT096803.1 Soybean clone JCVI-FLGm-15B20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028191882.10.0histone deacetylase HDT1-like
SwissprotQ8LJS21e-107HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A445ICT30.0A0A445ICT3_GLYSO; Histone deacetylase HDT1
STRINGGLYMA12G30600.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.15e-30histone deacetylase 2C
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]