PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21314.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 330aa    MW: 35511.6 Da    PI: 8.5024
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21314.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702175.52.5e-541362847153
      DUF702   7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskk.qsalsstklssaeskkelet 102
                  CqdCGn+akkdC ++RCRtCCk rg+dC+thvkstW+p+ +rrer  + a+    +  +    ++++    +++s++ +++  s  +ss  ++  + +
  KHN21314.1 136 VCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWIPSVRRREREITVASGGGGKRPRGivGSSQKATVTSHSSNSnATTPRSLATSSF-HQDGSLK 233
                 7*********************************************887777654443333333333333333333330334444444444.4445556 PP

      DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                 +sl  +v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++
  KHN21314.1 234 QSLLGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVD 284
                 6799*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.6E-52136284IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.5E-26136178IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.4E-22238283IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLGLRDLVLI APSPSSLNHH QGQPFSENHT NTHTPNNIPL PSSAASLSVG FGIFPLLTAT  60
PCVPQSHHHH HHNNEVQELG GGANSNTTTN YWNLKMCQQE VNNPPKKGVI NVADHDDEKG  120
IMENEENGVY GPNFRVCQDC GNRAKKDCIF RRCRTCCKGR GYDCNTHVKS TWIPSVRRRE  180
REITVASGGG GKRPRGIVGS SQKATVTSHS SNSNATTPRS LATSSFHQDG SLKQSLLGHV  240
RAPAVFKCHR VSAIGNGEDE FAYLATVHIS GHVFKGFLYD HGVDGKTANA VVPCVSELQV  300
GNNCSGKNRE CSSAIAIGVT NNNAYPASAT
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21314.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358970.0AC235897.2 Glycine max clone GM_WBc0123J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186806.10.0protein LATERAL ROOT PRIMORDIUM 1-like
RefseqXP_028186807.10.0protein LATERAL ROOT PRIMORDIUM 1-like
RefseqXP_028186808.10.0protein LATERAL ROOT PRIMORDIUM 1-like
RefseqXP_028186809.10.0protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A445I3G40.0A0A445I3G4_GLYSO; Protein LATERAL ROOT PRIMORDIUM 1 isoform A
STRINGGLYMA11G21700.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.28e-50Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]