PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21256.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 366aa    MW: 40412.8 Da    PI: 5.3854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21256.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015256278123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ Cgk Fs+   L  H ++H
  KHN21256.1 256 YKCGACGKIFSTFQGLGGHRSVH 278
                 9***********99998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-5255282No hitNo description
PROSITE profilePS5015711.905256283IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-4256281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280258278IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MRSHPERSWR GVSPPTHFPN KNSSSSSSLS SSFSFSSHNS DSMEKNMEED RDDYDECVGV  60
GAVCDGGGNR AIDLSTFTCP SWLKTDVRGR KCIGAYEAAE TLAYLSVYSK YFCGESNGVS  120
PKKDEVRPKS APPLIKLGKR KINFSGSSSS KKHEVKKIKF YLKGELKIGK RNDADGEDDD  180
DEDEKLNRCK GLSESEVEDE EGFDNVITEV VAPDRMQDDV DERKGKRVVD HKGKNIKKLV  240
LKSMAKEKEN EKVGGYKCGA CGKIFSTFQG LGGHRSVHKG KNNNTVIIMD ESNHNHSEAL  300
GDQENNSSSS SNMHKVDEAP LPTDETRVNE EIPETPPLLA DEACQSSLGV KKLDFDLNEL  360
PCAMED
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21256.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219809.10.0uncharacterized protein LOC114401498
TrEMBLA0A0B2QIK00.0A0A0B2QIK0_GLYSO; Uncharacterized protein
TrEMBLA0A445F0Y30.0A0A445F0Y3_GLYSO; Uncharacterized protein
STRINGGLYMA13G04041.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15181913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-06C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]