PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN21118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25371.6 Da PI: 6.354 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.4e-17 | 64 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ r++Wv+eIr+p + r+++g++ t+e+Aa+a++ a ++l g KHN21118.1 64 PVYRGVRQRN-RNKWVCEIREPI----KkSRIWVGTYPTPEMAARAHDVAVLALSG 114 68*****999.8*********72....35*********************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-12 | 64 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-28 | 65 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-20 | 65 | 124 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-26 | 65 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.481 | 65 | 122 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.54E-28 | 66 | 124 | No hit | No description |
PRINTS | PR00367 | 3.9E-7 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-7 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MDFEIINESP DSTSLSSPSS LSPCTPPNSN PLSDSPNPQP SNIYTNPSHK RKAGRKKFRE 60 TRHPVYRGVR QRNRNKWVCE IREPIKKSRI WVGTYPTPEM AARAHDVAVL ALSGTSANFN 120 FPDSVSLLPL AKSRSAVDIR EAAKATTTAE AFIPNTVFAC SHKNAEDTCL NIGMHDDGSE 180 MFFDEEAVYN MPGLLDSMAE GLLITPPSMK RAMDWDDIGC VIDLTLWTN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN21118.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 2e-89 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540786.1 | 1e-171 | dehydration-responsive element-binding protein 1F | ||||
Refseq | XP_028192481.1 | 1e-171 | dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | A2WZI4 | 8e-50 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 8e-50 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | I1LRD3 | 1e-170 | I1LRD3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G09130.1 | 1e-171 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25490.1 | 7e-49 | C-repeat/DRE binding factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|