PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21079.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 305aa    MW: 32998.7 Da    PI: 7.5447
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21079.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007126148123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C+++F++   L  H  +H
  KHN21079.1 126 YECKTCNRTFPSFQALGGHRASH 148
                 99**********99999998887 PP
2zf-C2H213.20.00026213235123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F++   L  H+r+H
  KHN21079.1 213 HECSICGSEFTSGQALGGHMRRH 235
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-8125148No hitNo description
PROSITE profilePS5015710.305126153IPR007087Zinc finger, C2H2
PfamPF139125.7E-13126150IPR007087Zinc finger, C2H2
SMARTSM003550.052126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-8208235No hitNo description
PROSITE profilePS5015710.076213240IPR007087Zinc finger, C2H2
PfamPF139122.2E-11213237IPR007087Zinc finger, C2H2
SMARTSM003550.019213235IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEGLDSNNST HNSIAKGKRT KRMRLLSPCG VVATTVTSST SSASSTTTYE SEEEDMANCL  60
ILLAQGGESR HHPRHDKQQV EDHGLENCDD GAIKTEEKGN SSNVNTTTAA TTTAANNNTK  120
VGFYIYECKT CNRTFPSFQA LGGHRASHKK PKLAAEEKKQ PLPPSPLPPP TPSQLQHMIV  180
TNYDRFEEGS VKSGPPISLQ LGNNGNNNKG KIHECSICGS EFTSGQALGG HMRRHRASTN  240
ANNVVDTTRC NTVITTTITA VPPRNILQLD LNLPAPEDDL REAKFQFTAT SQVLVGTPAL  300
VDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192752.11e-174zinc finger protein ZAT5-like
TrEMBLA0A445HMN71e-172A0A445HMN7_GLYSO; Zinc finger protein ZAT5
STRINGGLYMA12G08660.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.19e-49C2H2 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]