PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN21055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18802.5 Da PI: 7.775 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.1 | 6.8e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+ ++ p++q++++ +++k+FG+s ++++++++pe++r+++++sl++e++ r+ +Pv+Gavg++++++++++q+++e+ KHN21055.1 2 SCNGCRVLRKGCSDTCPLRSCLqwiesPESQRHATLFLAKFFGRSDLISFISSVPETKRPALFQSLLFEGCGRMVNPVNGAVGLLSSGKWHVCQAAVET 100 6**********************************************************************************************9998 PP DUF260 95 al 96 +l KHN21055.1 101 VL 102 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.635 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDTCPLR SCLQWIESPE SQRHATLFLA KFFGRSDLIS FISSVPETKR 60 PALFQSLLFE GCGRMVNPVN GAVGLLSSGK WHVCQAAVET VLDGGVLRPS SETFTGDSDD 120 TRYHLRTLTL MHDVREMNEN SSLMNRPQEL EMASYGNHKK NQILNLFM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN21055.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028208881.1 | 1e-124 | LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 8e-60 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A0B2QIB3 | 1e-122 | A0A0B2QIB3_GLYSO; LOB domain-containing protein 39 | ||||
STRING | GLYMA17G35440.1 | 1e-123 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 3e-62 | LOB domain-containing protein 39 |
Publications ? help Back to Top | |||
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