PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN21020.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 600aa    MW: 67238.6 Da    PI: 8.4129
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN21020.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-1720106799
                 .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  s++++s+rl+lp  f+  ++g   +   ++l+ +sg+ W+v+l   k+++  ++  GW+ Fv +++L+ g+ +vF+++g+  f  +v++f+k
  KHN21020.1  20 YSSAFSSHRLRLPDGFVCCMEGRAYG--SVSLTGPSGNIWTVQL--IKQDNDLFFHHGWSTFVVDHRLECGELLVFRYEGHLHF--TVQIFDK 106
                 4899************9666777666..5***************..9*******************************987666..9**9997 PP
2B345.81.1e-14255346195
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  F + n++k+gD+++F+l+++ e   +v+
  KHN21020.1 255 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFIRGNNIKVGDICIFELVRECEL--RVR 346
                 556667778888899*******98996..46999***************954566666799***********************9986554..555 PP
3B348.91.2e-15480568190
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 f+k++++ +v+ s  l +p +f ++h   ++ ++++tl++++g  W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+ + e 
  KHN21020.1 480 FVKIMKKFNVSGSYTLKIPYQFSAAHL--PTYKTEVTLRNSRGGCWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVAQCEM 568
                 89999999***************9994..334569***************77666666799***********************9875443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2110109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-2012109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.11214107IPR003340B3 DNA binding domain
SMARTSM010198.4E-1116107IPR003340B3 DNA binding domain
PfamPF023628.5E-1521106IPR003340B3 DNA binding domain
CDDcd100171.91E-1621105No hitNo description
Gene3DG3DSA:2.40.330.105.1E-20250348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-21250348IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-18253347No hitNo description
PROSITE profilePS5086312.717255351IPR003340B3 DNA binding domain
PfamPF023622.4E-11255347IPR003340B3 DNA binding domain
SMARTSM010196.2E-10255351IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-22472573IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-23473574IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-18478572No hitNo description
PROSITE profilePS5086312.619480576IPR003340B3 DNA binding domain
PfamPF023625.6E-13480567IPR003340B3 DNA binding domain
SMARTSM010197.9E-12480576IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MGCDCGGKLN VRKPHFYEVY SSAFSSHRLR LPDGFVCCME GRAYGSVSLT GPSGNIWTVQ  60
LIKQDNDLFF HHGWSTFVVD HRLECGELLV FRYEGHLHFT VQIFDKDACE KEAAFHSECS  120
QSSSDFDNIK GQKRDRKENS SLHIVVDGVP KKMRGSTNEN QELELGVGKE LLLYDVVRPI  180
SMFRENEETS KTCSANDVPV PFHMENSNED EEADILYRSG NDDHHYILSG VSLSNVSAHD  240
EKKVAQSFIS SFPYFVRIMK SFNVSGSYTL NIPYQFSMAH LPNCKIKIIL HNLKGEHWTV  300
NSVPTTRVHT SHTLCGGWMA FIRGNNIKVG DICIFELVRE CELRVRIAEV GKDGRDCQVG  360
NVAMTRPSAG HAVSSKCMSM NPKVNSKCIR KVDLSDKKWS KIGQETILSI DLKKSSRASN  420
TSKKMGLCPQ SKAAHKKLAA PRRHRVEDEL SSQAKAGLRM LFALDEQRVA QAFSSPFPSF  480
VKIMKKFNVS GSYTLKIPYQ FSAAHLPTYK TEVTLRNSRG GCWTVNSVPD AKGRTVHTFC  540
GGWMAFVRDN DINFGDTCIF ELVAQCEMQV YISGVGKEGL DHQNGHLKLT NRLANVPSTC
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN21020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-138AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028198324.10.0B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A445H3470.0A0A445H347_GLYSO; B3 domain-containing protein isoform A
STRINGGLYMA14G08641.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-22B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]