PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN20938.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 293aa MW: 32482.2 Da PI: 6.2547

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN20938.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.4e-10	215	256	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq KHN20938.1 215 AKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 256 69*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.951	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-12	207	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.61E-11	208	260	No hit	No description
SuperFamily	SSF47459	1.83E-13	208	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-7	216	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016787	Molecular Function	hydrolase activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MALSLTSNGV NEYQKCVVEE EDGSQSTNGL SNDSASAITN SPPLCGNEYV HKSTHYQLEE 60 AESLINFKAN DQYNNLMQGS ESFLSFQQSW MFSKESNLHE GYNQWNHVIS PKSPTDMRLV 120 QNFSCFETAT GYSSIFNGAK DKQHGESSSS GWLYSEPNVP SDSLHESAAQ ELVLKKRSFM 180 GENMQVTNAK KPCTSASKAA KPKSNPSQDP QSVAAKNRRE RISERLKILQ ELVPNGSKVD 240 LVTMLEKAIS YVKFLQLQVK VLAADEFWPV QGGKAPDISQ VRQAIDAILS SQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN20938.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031123	0.0	KT031123.1 Glycine max clone HN_CCL_81 bHLH transcription factor (Glyma14g07590.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014622378.1	0.0	putative transcription factor bHLH086
Refseq	XP_028200080.1	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	1e-61	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A445H2N2	0.0	A0A445H2N2_GLYSO; Putative transcription factor bHLH086
TrEMBL	I1M867	0.0	I1M867_SOYBN; BHLH transcription factor
STRING	GLYMA14G07590.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	5e-64	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]