PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN20822.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 248aa MW: 28461.9 Da PI: 9.8698

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN20822.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.6e-07	12	95	7	90
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A+e GF ++ +s ++ g+ C ++g+ + ++k+ r+ + + ++gC +l+ k + + w+v+ + HnHela KHN20822.1 12 AHENGFVAVIMRSDTEtGSRGRSSFVLIGCERSGTYKCRNKE--FVRKDTGSRKCGCPFRLRGKPVRgGEGWMVKLICGIHNHELA 95 899999999988872334444455556*****9988..8999999*********9998999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-5	12	95	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-9	208	247	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
RDDVLQWART VAHENGFVAV IMRSDTETGS RGRSSFVLIG CERSGTYKCR NKEFVRKDTG 60 SRKCGCPFRL RGKPVRGGEG WMVKLICGIH NHELAKSLVG HPYAGRLTKE EKKIIADMTK 120 SMVKPKNILL TLKEHNADSY TTIKQIYNAR SAYRSSIRGA DTEMQHLMKL LERDQYIHWH 180 RLKDEVVVRD LFWCHPDAVK LCNACHLVFF IDSTYKTNRY RLPLLDFVGV TPTAMTFSAG 240 FAYLEAER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN20822.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235256	0.0	AC235256.1 Glycine max strain Williams 82 clone GM_WBb0037K19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006598422.1	1e-161	protein FAR1-RELATED SEQUENCE 4-like
TrEMBL	A0A0B2P7H6	1e-179	A0A0B2P7H6_GLYSO; Protein FAR1-RELATED SEQUENCE 6 (Fragment)
TrEMBL	A0A0B2QM79	0.0	A0A0B2QM79_GLYSO; Protein FAR1-RELATED SEQUENCE 6 (Fragment)
STRING	XP_004507516.1	6e-99	(Cicer arietinum)
STRING	XP_007139082.1	6e-97	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF180	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	8e-10	FAR1-related sequence 6

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]