PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20727.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 427aa    MW: 47923.4 Da    PI: 4.6246
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20727.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-071661342
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                +r C+ + + +++++C  ++ +lC+ C    H+       H++v+l
  KHN20727.1 16 ARACESCLKVRARWYCAADDAFLCHGCDNMVHSAnqlasrHERVKL 61
                578******99*********************66889999998875 PP
2CCT67.63.5e-23374417144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  KHN20727.1 374 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 417
                 9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.8E-71461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1111461IPR000315B-box-type zinc finger
PfamPF006431.8E-51661IPR000315B-box-type zinc finger
CDDcd000213.60E-61761No hitNo description
PfamPF062039.9E-18374416IPR010402CCT domain
PROSITE profilePS5101715.993374416IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MTNEMKEASA LGARTARACE SCLKVRARWY CAADDAFLCH GCDNMVHSAN QLASRHERVK  60
LQTASSKVNY SVTPKVAWHS GFTRKARTPR HNNNRHSSLK QQQQKKPLHE ERGEEEVFFN  120
NTISLLPLVP ELGSEEPLLN DETEEQLLCR VPVFDAELCS IYNEVKDEVV AAGEEALDLE  180
NFSSEFLPSD TDLAEFTADV KSFLGNGADE DSPDDDEHVK ESELLILDCK EEEGDEEMDE  240
CIDGVLIGAK DAMVKVKDEE ELDADDDTAC HLDSILDMNG EAFNWNIVES ESPAQAQEDE  300
VSKVGTKKDI FLRLNYEEVI TAWASQGSPW TNGTPPKFFN SDDCWLDFLG SNGGNVQCCY  360
GAVGSLRVHA DGGREARVSR YREKRRTRLF AKKIRYEVRK LNAEKRPRMK GRFVKRTPFV  420
GATALPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384400RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20727.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0689030.0HM068903.1 Glycine max CONSTANS-like zinc finger protein (COL21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239992.20.0CONSTANS-like zinc finger protein
RefseqXP_028239840.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A445JUG00.0A0A445JUG0_GLYSO; Zinc finger protein CONSTANS-LIKE 16 isoform A
TrEMBLK7L0J70.0K7L0J7_SOYBN; CONSTANS-like zinc finger protein
STRINGGLYMA07G10161.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-80B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]