PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20674.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 585aa    MW: 63080.5 Da    PI: 7.7933
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20674.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.91.2e-14108147242
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                 ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ e+
  KHN20674.1 108 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVEN 147
                 89**************************.********9875 PP
2TCR50.93e-16192231140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  KHN20674.1 192 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 231
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-17107147IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.138108232IPR005172CRC domain
PfamPF036382.9E-11109144IPR005172CRC domain
SMARTSM011148.4E-20192233IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12195230IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MGEGEGGGDC VQKNASLSEV VAPSAASLEV PAKKLARQLD FTGAPEHPPP AAAIGGCFVI  60
AAAYIFQKLQ LEVKQAFPSC SKSFQRKPES PKSRSRPNFE MKDATPKKQK QCNCKHSKCL  120
KLYCECFASG IYCDGCNCVN CFNNVENEAA RREAVEATLE RNPNAFRPKI ASSPHGTRDS  180
REDAGEVLIL GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF EGSEERQALF  240
HGDQNNMAYI QQAANAAITG AIGSSGYSSP PVSKKRKGQE LFFWPTTKDP SISKLGQQVN  300
HVRGPAPSSS LSPVSGARVG TATLGPSKFM YRSLLADIIQ PQHLKELCSV LVLVSGQAAK  360
TLTDQKILME KQAEDQTETS LASSSQEQLP SQKEGHIEKT VADDCSSANQ TDKISPDNSS  420
SDGADVPKGR PMSPGTLALM CDEQDTMFMT TASPIAPMAH ACNTSSQFPY GQGMTEVYPE  480
QERIVLTKFR DFLNRVITMG EINGKLILSS FKTKCSSLTR NELESQKDPI INGIGNASSE  540
IVLQQGATSN GVTKPGSPLV TTSTSMIPGN IAENGETKVK IEKEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-321002412132Protein lin-54 homolog
5fd3_B3e-321002412132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529992.10.0protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_028239774.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A445JU560.0A0A445JU56_GLYSO; Protein tesmin/TSO1-like CXC 5
TrEMBLK7L0G10.0K7L0G1_SOYBN; Uncharacterized protein
STRINGGLYMA07G09380.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-173Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]