PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN20647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 220aa MW: 22810.1 Da PI: 4.9658 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 84.4 | 2.8e-26 | 94 | 154 | 96 | 154 |
DUF702 96 skkele.tsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 s++++ ++slP++v+++avf+cvrv+svdd ge+e+aYq++v+igGhvfkG+LydqG+e+ KHN20647.1 94 SHHHVGfKESLPSQVRAPAVFKCVRVTSVDDgGEDEYAYQAVVKIGGHVFKGFLYDQGVED 154 3333330355*********************899*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.0E-23 | 100 | 153 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 9.5E-30 | 104 | 152 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MVMITLMVMI EKGSSVVATT RRFPSDSGAF ADWSAPPSAI SGRGDDLDVV LSDPNNNNGS 60 NNSNNPATAH GVNVFPLLTA TPCLESEGIM GNISHHHVGF KESLPSQVRA PAVFKCVRVT 120 SVDDGGEDEY AYQAVVKIGG HVFKGFLYDQ GVEDKEGYPN LSELHLSGGG GGNVTSGSDG 180 GRNGISSSSP MVDRSHDVYA ASGGGLLLGG SSNYGNHPIN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN20647.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025983159.1 | 1e-65 | protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_028220193.1 | 1e-65 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
TrEMBL | A0A0B2QLM2 | 1e-158 | A0A0B2QLM2_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA20G05015.1 | 6e-67 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 2e-33 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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