PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN20602.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 196aa MW: 22763 Da PI: 4.0421 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 32.6 | 2.7e-10 | 119 | 182 | 2 | 61 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtg 61 fY+ YAk +GFsvrks+ ++ + +e+ ++tfvC + g+r+++ ++ +++++++ ++ + KHN20602.1 119 FYCWYAKITGFSVRKSHILRN-TCRETLQQTFVCLCAGYRRDKGSTsnirkRQEKKKKASVVVKQ 182 9****************9999.66779***************99994444323333333333334 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-8 | 119 | 181 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MESSHNFCSS VNGDGDNDVT EVYENDDDDE AYEEDVDHNR VGDSDDQDDV GLEDEEEVDS 60 EVDNDNYRDY DDFWIPGFFK EECITIDTIV DIRQLDMEKI TVEDVSKLDF CDLEIAYLFY 120 CWYAKITGFS VRKSHILRNT CRETLQQTFV CLCAGYRRDK GSTSNIRKRQ EKKKKASVVV 180 KQCFVFMCIF VGNDGM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 174 | KRQEKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN20602.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006603498.1 | 4e-53 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0B2QLH7 | 1e-140 | A0A0B2QLH7_GLYSO; Uncharacterized protein | ||||
TrEMBL | A0A445H587 | 1e-136 | A0A445H587_GLYSO; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
STRING | GLYMA12G18636.1 | 9e-72 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3265 | 7 | 34 |
Publications ? help Back to Top | |||
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