PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN20508.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 668aa MW: 78089.7 Da PI: 6.3475

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN20508.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.9	3.3e-23	58	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAke GF +r+s+s + +++e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ ++el+HnH+++ KHN20508.1 58 NFYNIYAKEQGFGIRVSNSWFRLKKKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIRMVESNRWRIVEVELQHNHQVS 142 6*******************99999***********99888.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-21	58	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-23	263	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.211	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.3E-4	558	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MEEVCLNSEP LFDESDEVDV EGNSSVAEHD LESLNSQPNN SPLPTVGLEF DSFDEVYNFY 60 NIYAKEQGFG IRVSNSWFRL KKKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIVI 120 RMVESNRWRI VEVELQHNHQ VSPQSKRFYK SHKKMIVEAS KSQPPSEPVT EVHTIKLYRT 180 TVMDVDYNGY SNFEESRDTN FDKLKYLELR EGDASAIYNY FCRMKLTDPN FFYLFDIDDD 240 GHLKNVFWAD SRSRIAYNYF NDIVTIDTTC LANKYEIPLI SFVGVNHHGH SVLLGCGFLG 300 HESVDYFVWI FKAWLQCMLG HPPHVVITDQ CKPLQIAVAQ VFPHARHCYS LQYIMQRVPE 360 KLGGLQGYEE IRRQLYNAVY ESLKIVEFES SWADMIKCHG LVDNKWLQTL YKDRHLWVPV 420 YLKDAFFIGL IPTKENEGLT AFFDGYVHKH TSFKEFVDKY DLVLHRKHLK EAMADLESRN 480 VSFELKTRCN FEVQLAKVYT KEIFQKFQSE VEGMYSCFNT RQVSVNGSII TYVVKERVEV 540 EGNEKGVKSF EVLYETTELD IRCICSLFNY KGYLCRHALN VLNYNGIEEI PSRYILHRWR 600 RDFKQMFNQF HVYDNVDSHN PVPLYTRLFN SALPVLEVGA QSQEHYMVAL KELEELLGKF 660 DIEDNNIM

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MEEVCLNSEP LFDESDEVDV EGNSSVAEHD LESLNSQPNN SPLPTVGLEF DSFDEVYNFY  60
NIYAKEQGFG IRVSNSWFRL KKKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIVI  120
RMVESNRWRI VEVELQHNHQ VSPQSKRFYK SHKKMIVEAS KSQPPSEPVT EVHTIKLYRT  180
TVMDVDYNGY SNFEESRDTN FDKLKYLELR EGDASAIYNY FCRMKLTDPN FFYLFDIDDD  240
GHLKNVFWAD SRSRIAYNYF NDIVTIDTTC LANKYEIPLI SFVGVNHHGH SVLLGCGFLG  300
HESVDYFVWI FKAWLQCMLG HPPHVVITDQ CKPLQIAVAQ VFPHARHCYS LQYIMQRVPE  360
KLGGLQGYEE IRRQLYNAVY ESLKIVEFES SWADMIKCHG LVDNKWLQTL YKDRHLWVPV  420
YLKDAFFIGL IPTKENEGLT AFFDGYVHKH TSFKEFVDKY DLVLHRKHLK EAMADLESRN  480
VSFELKTRCN FEVQLAKVYT KEIFQKFQSE VEGMYSCFNT RQVSVNGSII TYVVKERVEV  540
EGNEKGVKSF EVLYETTELD IRCICSLFNY KGYLCRHALN VLNYNGIEEI PSRYILHRWR  600
RDFKQMFNQF HVYDNVDSHN PVPLYTRLFN SALPVLEVGA QSQEHYMVAL KELEELLGKF  660
DIEDNNIM

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN20508.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028219794.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0B2QKT7	0.0	A0A0B2QKT7_GLYSO; Protein FAR1-RELATED SEQUENCE 6
STRING	GLYMA20G02970.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]