PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN20440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 25864.4 Da PI: 8.6969 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.9 | 2.4e-10 | 79 | 126 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + K +K +iL Av+ + +L KHN20440.1 79 SKACREKLRRDRLNDKFVELGSILEPG---RPAKTDKTAILIDAVRMVTQL 126 6789**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.303 | 75 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-12 | 77 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.85E-6 | 78 | 131 | No hit | No description |
Pfam | PF00010 | 5.3E-8 | 79 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-12 | 79 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-8 | 81 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVSRENTNWL FDYGLIDDIP VPDATFGVNS SAFTWPPNAL DAPSNVGVDI DGSLGDSDGL 60 KESGSKKRVR SESCAASSSK ACREKLRRDR LNDKFVELGS ILEPGRPAKT DKTAILIDAV 120 RMVTQLRGEA QKLKDTNQGL QEKIKDLKAE KNELRDQKQR LKAEKEKLEQ QLKSLNGQPS 180 FMPPPAAIPA AFAVQGQAHG NKLVPFISYP GVAMWQFMPP AAVDTSQDHV LRPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN20440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031119 | 0.0 | KT031119.1 Glycine max clone HN_CCL_12 bHLH transcription factor (Glyma12g16560.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001341819.1 | 1e-174 | bHLH transcription factor | ||||
Swissprot | Q9FH37 | 1e-108 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0B2QGT3 | 1e-173 | A0A0B2QGT3_GLYSO; Transcription factor ILR3 | ||||
TrEMBL | I1LSN4 | 1e-173 | I1LSN4_SOYBN; BHLH transcription factor | ||||
STRING | GLYMA12G16560.1 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-66 | bHLH family protein |