PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20225.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 1114aa    MW: 125577 Da    PI: 9.3317
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20225.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-104682341
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      W++eE e++++a +++G++ Wk++a+ +  +R+ +++ 
       KHN20225.1 46 QWSKEELERFYEAYRKYGKD-WKKVAAFIR-NRSTEMVE 82
                     6*****************99.*********.***98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-114190IPR009057Homeodomain-like
PROSITE profilePS5129310.8484295IPR017884SANT domain
SMARTSM007171.1E-54391IPR001005SANT/Myb domain
PfamPF002493.0E-94686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-64685IPR009057Homeodomain-like
CDDcd001678.07E-74781No hitNo description
SMARTSM011353.6E-56626727IPR033471DIRP domain
PfamPF065841.4E-32626726IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MAPTRKSRSV NKRMSSSNDN SPEKDGINSN KNKLRKKKLT DKLGSQWSKE ELERFYEAYR  60
KYGKDWKKVA AFIRNRSTEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVMEGSDS  120
ERESNDAPGS QKPVKRKHEE VQLSVSKDQS HSIASRDDCL SILKKRRFDG MQLKPYAVGK  180
RTPRVPVYKK DDTENYVSPY RRSLKSTIDA NDDEVAHVVA LALTEAAHRG GSPQVSQTPS  240
RRVEQKSSPI QSLERKHQMS ETACAKFHDV SVDEEVLESS IESRGAENGE YARDNSSLMD  300
TEGISTVKVF QKRKKFYRKR ERVENVGNHQ LDDGGEACSG TEEGLSFSSL KEKVDIDVTN  360
EKLEKFSPKS QRKRNKKLFF GDETPALNAL QTLADLSLMM PISTMESESS IQFKGERMVA  420
DKNNKSALLE ATSTNHKRHQ LKHSAVPEIE VSTSKKSKIG KESTKDTNVL SESKGKLPFA  480
DTTWKKKRKS MGSKVANAKL DSYPSGPLKD EALDDDNKPV VKGKHTDQAF TLPKQLKTVK  540
SSESSFCSDQ KDLTVSTAEV PLLNEVSLPT KRSRRKMILQ RTSLPKEKSS DYILKSQPNK  600
YSTLKAKVSS CLASNMVRRW FIFEWFYSAI DYPWFAKREF MEYLNHVGLG NIPRLTRVEW  660
SVIKSSLGKP RRFSEHFLCE ERHKLEQYRE SVRKHYTELR TGIRDGLPTD LAKPLYVGQR  720
VIALHPKTRE IHDGSVLTVD YDKCRIQFDR PELGVEFVMD IDCMPLNPSD NMPEALRRHI  780
GSQKASFMNK EPQINGNSNF GGCEMHSFPV KAKVATVDNL CAQAGCAQPC KVTHHQAKEA  840
DIHAVSELKR ALDKKETLLM ELRSANSDIL ENQNGIECLK DSEVFKKHYA TVSDAMLQLR  900
QRNTYRGNSL PPWMKPQASF NVHDDLPGML DSSLTQELGS TVVQVIKGSR LRAHAMVDAA  960
FEALSLTKEG EDAFIKIGQA LDSINHQQLA SKSRLPVIRS QEQVNVNGSF YHLSHSTSGV  1020
SEPILNDPSV PKPHNYSDKF DTELPSDLIA SCVATLIMIQ TCTERQYPPA DVAQILDSAV  1080
TSLHPCCPQN LPIYREIQMC MGRIKTQMLA LIPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1569576TKRSRRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353620.0AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028221846.10.0protein ALWAYS EARLY 2-like isoform X3
TrEMBLA0A445F9F30.0A0A445F9F3_GLYSO; Protein ALWAYS EARLY 3 isoform C
STRINGGLYMA20G37826.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]