PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN20202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36295.6 Da PI: 5.6778 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 9e-13 | 127 | 178 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++++k+L+ KHN20202.1 127 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YIQRGDQASIIGGAINFVKELE 178 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-13 | 125 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.64E-13 | 125 | 179 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-15 | 126 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.434 | 126 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-10 | 127 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-8 | 132 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MALEAVVFPQ SQDPFGGSGY GSVNNKDFYN CTLLAATSPN SWGDYEQHIN INKEEEQGGA 60 SISTFQPESN YPYGNWTSSS SSMLPHFNNE LQETTTTDPS NTLDSLNTRP KRRRAKSRKN 120 KEEIENQRMT HIAVERNRRK QMNEYLSVLR SLMPDSYIQR GDQASIIGGA INFVKELEQR 180 MHFLGAQKEG EGKSEAGGAT NMPFSEFFTF PQYSTSGGGG CSDNSAAVGE DVGEVKCGIA 240 DIEVTMVESH ANLKIRSKKR PKQLLKLVSG LHTMRLTILH LNVTTTGEVV LYSLSVKVED 300 DCKLGSVDDI AAAVYQMLDK IQQEAMLN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 138 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN20202.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093468 | 0.0 | BT093468.1 Soybean clone JCVI-FLGm-14K7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556500.1 | 0.0 | transcription factor bHLH96 | ||||
Refseq | XP_028220511.1 | 0.0 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 8e-81 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A445F9A7 | 0.0 | A0A445F9A7_GLYSO; Transcription factor bHLH96 | ||||
TrEMBL | I1NIX1 | 0.0 | I1NIX1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G37550.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-81 | bHLH family protein |
Publications ? help Back to Top | |||
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