PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN20066.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 386aa    MW: 42572.6 Da    PI: 7.1269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN20066.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-09197244455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  KHN20066.1 197 SHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 244
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17191261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-10191248No hitNo description
Gene3DG3DSA:4.10.280.101.8E-17193260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624193243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6197244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLHCANTSGN LAVAGYTTVL ERQRARMKWQ EEQGYFSGNS FNGVFSSSSL HVHDSIMVAA  60
DSGCALAEVV AQAQARSTNS SSISRTFSCP PALVEPESES KPKPKPKPTD SSVGKDGFKK  120
RKPDKPHHPK VVAENDNKDK RIKFGSDDGE SKITKSNTTN TNTNNNKETC AETSNSKASE  180
KPDYIHVRAR RGQATDSHSL AERVRREKIS ERMKYLQDLV PGCNKVTGKA GMLDEIINYV  240
QSLQRQVEFL SMKLAAVNPR LDLSIDDLFD KDVFSTCATN FPNIGISSTS DISNPAYLQF  300
NSPQQIFSYD GLDPSDMGLR RTISAPVSMP ETYLQSSCFT QMLPSSTWEG DFQNLCNFDF  360
DQARATSFPS QLLSGLVEAG NLKMEM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN20066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982350.0BT098235.1 Soybean clone JCVI-FLGm-26H15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527205.10.0transcription factor bHLH63
RefseqXP_028234560.10.0transcription factor bHLH63-like
TrEMBLA0A445K3300.0A0A445K330_GLYSO; Transcription factor bHLH63 isoform B
TrEMBLI1K7700.0I1K770_SOYBN; Uncharacterized protein
STRINGGLYMA06G01430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.16e-58cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]