PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN20040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 191aa MW: 21528.7 Da PI: 8.2266 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 90.2 | 4.5e-28 | 13 | 69 | 3 | 59 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaa 59 sg+++CqdCGnqakk+C++ RCRtCCk++gf+C+th+kstW p+++rr + q + KHN20040.1 13 SGGSKCQDCGNQAKKECSYLRCRTCCKNKGFHCQTHIKSTWTPVDHRRRHFQGQGGD 69 6889*****************************************999986655544 PP | |||||||
2 | DUF702 | 72.9 | 9.9e-23 | 75 | 136 | 93 | 154 |
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ + + ++P+ +s+a frc++v+s+dd+ +e+aYqt+v+igGhvf+G+LydqG+e KHN20040.1 75 NHNQINPYSELRFPAATNSMATFRCIHVRSMDDAVNEIAYQTSVNIGGHVFSGLLYDQGPEY 136 445555566677***********************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.6E-22 | 15 | 64 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.7E-24 | 17 | 58 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 6.9E-19 | 80 | 135 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 7.0E-20 | 86 | 134 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MQRVRQGEEE VASGGSKCQD CGNQAKKECS YLRCRTCCKN KGFHCQTHIK STWTPVDHRR 60 RHFQGQGGDH HIPQNHNQIN PYSELRFPAA TNSMATFRCI HVRSMDDAVN EIAYQTSVNI 120 GGHVFSGLLY DQGPEYQRGH QGESSTGFVD KQQNSNNNNL DSSGASATHQ EYLFPLSSFR 180 PGMPYLTYPR S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN20040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 4e-44 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028234232.1 | 1e-144 | protein SHI RELATED SEQUENCE 3-like | ||||
Swissprot | Q9SJT8 | 2e-43 | SRS3_ARATH; Protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A445K2Z8 | 1e-143 | A0A445K2Z8_GLYSO; Protein SHI RELATED SEQUENCE 3 | ||||
STRING | GLYMA06G01160.2 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 2e-43 | SHI-related sequence3 |
Publications ? help Back to Top | |||
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