PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN19983.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 832aa MW: 96472 Da PI: 7.8417

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN19983.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.4	3.6e-16	94	174	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+eYA++vGF +++++s+ sk++g++++ + Cs+ g+++e+ + + ka +++kk++dg+w ++++++eHnH ++p KHN19983.1 94 SFYREYARSVGFGITIKASRCSKKSGKFIDIKIACSRFGSKRESGTV----------VNPRRKAGIHIKKKQDGNWIIYNFVKEHNHGICP 174 5*************************************9998766..........3333389*********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-13	94	174	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-26	252	344	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.841	530	568	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-8	543	570	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.6E-6	544	566	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence Send to blast
MEIDLELPIC EHEMLKSGSS GNDVTDTACD IYLEEQSINP SSMTEHSKKV LSENAFCCQD 60 QVDLNSNQVD AIDKFPFKEP QNGLEFESKE AAYSFYREYA RSVGFGITIK ASRCSKKSGK 120 FIDIKIACSR FGSKRESGTV VNPRRKAGIH IKKKQDGNWI IYNFVKEHNH GICPDDFFRG 180 SKQTSIVASQ KKGMQLALEE GDVQSMIEYF VSMQCKNPNF FYAIDLDQNR HLRTVFWVDS 240 KGRLDYQNFH DIVLIDTFYL RNKYKIPFVP FVGVNHHFQY ILLGCALVGE ETVSAFIWLM 300 RAWLKAMSNL PPKVIITDQE QFLKEAVMEV FPDKRHCFCL SHILCKITKN LDYIIDQNNN 360 FMGKFDKCIH HSCSDEQFEK RWWKLINRFE LKNDEWVQSL YEDRKKWVPT FMQDISLAGL 420 STTVRYESIS SSFDKYICVD STFKEFIEQY KVFSIDSFDM EAKADFETKQ KQPALRSLSP 480 FEKQLSTIYT DAIFRKFQLE ILGMMSCHLQ KETEKRANVT FLVDDFEEQK KFIVSWKEAD 540 LYVSCSCCLF QYKGFLCRHA ILVLQKSGIT NIPSHYILKR WMKDAKANQF VGDVITRTAH 600 RVQRFNDLCR QAIILSEIGS LSEDTYRVAS QALEEIYKHC VNANNFARST LESNKLVLNG 660 FDVEEKNDGC HRAKPTKKRK SFNKRECSDP ERINIKMLDD FQKREQRNTR AHNFDNCYIS 720 QQDIQTVNLD SRASTLDVYY GAQRNVLGDS QLNSVSVMRD CYYGSQLAIL GLGQLHSMPS 780 RGSHYEMQHS MQRPLQGLLT FRTPKAMEQP IRDSQFHGIT SKQLDVDKSL SS

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence Send to blast

MEIDLELPIC EHEMLKSGSS GNDVTDTACD IYLEEQSINP SSMTEHSKKV LSENAFCCQD  60
QVDLNSNQVD AIDKFPFKEP QNGLEFESKE AAYSFYREYA RSVGFGITIK ASRCSKKSGK  120
FIDIKIACSR FGSKRESGTV VNPRRKAGIH IKKKQDGNWI IYNFVKEHNH GICPDDFFRG  180
SKQTSIVASQ KKGMQLALEE GDVQSMIEYF VSMQCKNPNF FYAIDLDQNR HLRTVFWVDS  240
KGRLDYQNFH DIVLIDTFYL RNKYKIPFVP FVGVNHHFQY ILLGCALVGE ETVSAFIWLM  300
RAWLKAMSNL PPKVIITDQE QFLKEAVMEV FPDKRHCFCL SHILCKITKN LDYIIDQNNN  360
FMGKFDKCIH HSCSDEQFEK RWWKLINRFE LKNDEWVQSL YEDRKKWVPT FMQDISLAGL  420
STTVRYESIS SSFDKYICVD STFKEFIEQY KVFSIDSFDM EAKADFETKQ KQPALRSLSP  480
FEKQLSTIYT DAIFRKFQLE ILGMMSCHLQ KETEKRANVT FLVDDFEEQK KFIVSWKEAD  540
LYVSCSCCLF QYKGFLCRHA ILVLQKSGIT NIPSHYILKR WMKDAKANQF VGDVITRTAH  600
RVQRFNDLCR QAIILSEIGS LSEDTYRVAS QALEEIYKHC VNANNFARST LESNKLVLNG  660
FDVEEKNDGC HRAKPTKKRK SFNKRECSDP ERINIKMLDD FQKREQRNTR AHNFDNCYIS  720
QQDIQTVNLD SRASTLDVYY GAQRNVLGDS QLNSVSVMRD CYYGSQLAIL GLGQLHSMPS  780
RGSHYEMQHS MQRPLQGLLT FRTPKAMEQP IRDSQFHGIT SKQLDVDKSL SS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN19983.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006581090.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X4
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	K7KS99	0.0	K7KS99_SOYBN; Uncharacterized protein
STRING	GLYMA06G00461.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]