PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19887.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 572aa    MW: 64157.8 Da    PI: 6.3726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19887.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.4e-15411458355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++h ++Er RR+++N++f  Lr+++P+      ++++Ka+iL  ++eYIk+L+
  KHN19887.1 411 TSHVMAERHRREKLNERFLILRSMVPSV-----TRMDKASILGDTIEYIKQLR 458
                 79*************************8.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5210187IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.964408457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-18410472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-14411462No hitNo description
PfamPF000101.5E-12411457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-18411470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17414463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MATPPPNNSL QTMLRAAVQS VQWTYSLFWQ LCPHKGILTW GDGYYNGAIK TRKTVQAMEV  60
STEEASLQRS EQLRELYESL SGGETNAKTR RPCASLSPED LTETEWFYLL CVSFSFHPGL  120
GLPGTAYARR QHLWLSGANE VDSKTFSRAI LAKTVVCIPV LEGVVELGTT DKMEEDLNFI  180
QHIKSFFIDQ QHPALTAKPA LSEQYSTSKP TSSSSSYPLV TANNTIPIQN IVDRGEAIIL  240
NNNTKEAELA VPNSSFIPSE LMELDATLEE FRVGSSGDGS NHLDSFPTEK SMALCSAGLE  300
LLQLQLPPAP AHPPTENLAQ GGTDTHYSQT VSSILQKNSR RWPESPSLNL LTDSFQSAFN  360
KWNSGADDYQ HHFHVSVASV TSQWLLKYIL FSVPYLHTNW LKGKGTSPYE TSHVMAERHR  420
REKLNERFLI LRSMVPSVTR MDKASILGDT IEYIKQLRDK IESLEARKRL TGKRRMRQVE  480
VSIIESEALL EVECVHREGL LLDLMTKLRE LGVEVMMVQS WVKDDGVFVA EMRAMVRENG  540
NGIKASVIEV KNALNQIIPR HEPYTLASSD HF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-2281877192Transcription factor MYC3
4rqw_B6e-2281877192Transcription factor MYC3
4rs9_A6e-2281877192Transcription factor MYC3
4yz6_A6e-2281877192Transcription factor MYC3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19887.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2208500.0KF220850.1 Glycine max cultivar Williams 82K clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208510.0KF220851.1 Glycine max cultivar Sowon clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208520.0KF220852.1 Glycine max cultivar Pureun clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208540.0KF220854.1 Glycine max cultivar Ilpumgeomjeong clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208550.0KF220855.1 Glycine max cultivar Seoritae clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208560.0KF220856.1 Glycine max cultivar PI96983 clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208590.0KF220859.1 Glycine max cultivar Hwangkeum clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208600.0KF220860.1 Glycine soja cultivar IT162825 clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
GenBankKF2208610.0KF220861.1 Glycine soja cultivar IT178480 clone 1f11r basic helix-loop-helix (bHLH) DNA-binding superfamily protein (Glyma03g30940) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520564.10.0basic helix-loop-helix protein A
RefseqXP_028225478.10.0basic helix-loop-helix protein A-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0B2QJG30.0A0A0B2QJG3_GLYSO; Basic helix-loop-helix protein A isoform B
TrEMBLI1JNT50.0I1JNT5_SOYBN; Uncharacterized protein
STRINGGLYMA03G30940.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-90bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]