PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19610.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 390aa    MW: 43099 Da    PI: 9.6905
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19610.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.63.4e-2855143383
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec..eaesssssas 83 
                 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  i++l+ +       ++ ++ ++     ++ss+as
  KHN19610.1  55 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLqfpqgfgQFHHHPQTlfP-FHESSAAS 143
                 79*************************************************************555555522222222321.11111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-2656168IPR005333Transcription factor, TCP
PROSITE profilePS5136928.28756114IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MMLTMMASSR EGYQAKQEGD TTTNIDKFSK ASSTTSRQWS AFRNPRIVRV SRSFGGKDRH  60
SKVCTIRGLR DRRIRLSVPT AIQLYDLQDK LGLSQPSKVI DWLLEATKFD IDKLPPLQFP  120
QGFGQFHHHP QTLFPFHESS AASHQLSLGP FSDASSTFVR DGGIQNLMAK SRYWENINSM  180
SRLRGNKEAE KGKWIKTSEE ENHDQDGVVG GYNNLQVSTQ RLFPMGSSST TTTHSLLPGL  240
LNNSMPYNAY SSEPSSLSLS QFGSHGLFPS QQVDPNPSSG NNGVQFQSSL SLPSSGSQLL  300
FGSSSATPSM FTTYAPFIAP SVDPDPRQFN HIHQFLNSGS QILPPHPLIP SLHHPFNSQI  360
RPFPAALFSS KLLDSDSSNH SQQDHKGSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1861115155Putative transcription factor PCF6
5zkt_B5e-1861115155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028237373.10.0transcription factor TCP5-like
TrEMBLA0A0B2QE850.0A0A0B2QE85_GLYSO; Transcription factor TCP5
STRINGGLYMA06G22240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-55TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]