PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN19594.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 192aa MW: 21706.2 Da PI: 9.4906 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.1 | 3.8e-41 | 36 | 111 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls +k+yh+rhkvCevhsk+ +v+v+g+eqrfCqqCsrfh l efD++krsCr+ La+hnerrrk+q KHN19594.1 36 CQVYGCNKDLSGCKDYHKRHKVCEVHSKTYKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKCLAGHNERRRKPQ 111 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.3E-34 | 29 | 97 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.573 | 33 | 110 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-38 | 34 | 114 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-30 | 36 | 109 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MVPTFSKGAP ILSLLESSTP PKRVRALGAH SQTAYCQVYG CNKDLSGCKD YHKRHKVCEV 60 HSKTYKVIVN GIEQRFCQQC SRFHLLAEFD DGKRSCRKCL AGHNERRRKP QVGIHSGKAG 120 RLLQLYPDSR FQETMLTSSF ICQEILPSGV LSYEKYEASD WRPIKTPMPV IQFLNNVGHS 180 GEKLKMVIGI CC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-29 | 36 | 109 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN19594.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028236608.1 | 1e-117 | squamosa promoter-binding-like protein 6 | ||||
Swissprot | Q94JW8 | 2e-47 | SPL6_ARATH; Squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A0B2QH73 | 1e-141 | A0A0B2QH73_GLYSO; Squamosa promoter-binding-like protein 6 | ||||
STRING | GLYMA04G32002.1 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69170.1 | 8e-50 | SBP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|