PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19439.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 434aa    MW: 47713.9 Da    PI: 9.3051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19439.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12368413655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri  ++ +L++l Pk     +k  s a++L +AveYIk+Lq
  KHN19439.1 368 SIAERERRTRISARIKKLQDLFPKT----DKQTSTADMLDLAVEYIKDLQ 413
                 689*********************8....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.132362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14365425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-11366417No hitNo description
Gene3DG3DSA:4.10.280.103.9E-14367423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11368418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9368413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSIVYSHAVK YSQGETRMNP EMDSNIGQHC HQQNSGLMRY RSAPSSLLTS LANNNNINNN  60
TTTNGCVNGK AFRSVHNHHQ QQRYPPSTSS EMETMLAKLI SSNNSEPLQV KEEAVASVSQ  120
PPQQHNGYSY GSSPQMMYQT QQIQGLPMPN GSLGNAFDGS FSAVNSLASQ NSTQPRLGAS  180
TNCNNLIRQK SSPAGFFSNY SVDNAMRDVA SFRGCDVSNG QAITSSSGLH GGTLNLSSRP  240
SSCSTRMPQI AENGNEGVEG NYVESRNLRN DNINSTKCYM PSFTTDFWDG SSFSPRTASN  300
NGEISFSTSN AMDIQGEDFG YQKVGLTHHS SLPGSSSRVA TMEKFYQIQG SVPCKIRAKR  360
GFATHPRSIA ERERRTRISA RIKKLQDLFP KTDKQTSTAD MLDLAVEYIK DLQKQVKMLR  420
DTRAKCTCTS NQKH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991790.0BT099179.1 Soybean clone JCVI-FLGm-26J2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539646.10.0transcription factor bHLH130
RefseqXP_028192742.10.0transcription factor bHLH130-like
RefseqXP_028192743.10.0transcription factor bHLH130-like
TrEMBLA0A0B2QGT80.0A0A0B2QGT8_GLYSO; Transcription factor bHLH130
TrEMBLI1LVE90.0I1LVE9_SOYBN; Uncharacterized protein
STRINGGLYMA12G36750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-51bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]