PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19380.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 615aa    MW: 66829.6 Da    PI: 6.5147
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19380.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.5e-29250309159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++ +tYeg+Hnh+
  KHN19380.1 250 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCAQDMSILFTTYEGNHNHP 309
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30235311IPR003657WRKY domain
SuperFamilySSF1182902.48E-26243311IPR003657WRKY domain
PROSITE profilePS5081127.99245311IPR003657WRKY domain
SMARTSM007746.4E-35250310IPR003657WRKY domain
PfamPF031062.2E-25251309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MEFGSERSGH EVKDEKRSES SVGDEEDRRE QEIVTQEPPL STTERSTVEA GPNASSLTKK  60
EEAVDELEVA KAEMGEVMEE NQRLKTCLNR ILNDYRALQM QFHNIVEQET KDSSDQKVNN  120
NNDQYQIDES NLVSLSLGRL PTRNNNKVPN NKPLKEEAEK EDKEGLSLGL DCKFETSKSG  180
ISTTEYLPIH QSPNNSVEEV PKEEAAGESW QPGKGIKTAR DATGEDEVSQ QNPAKKARVC  240
VRARCDTPTM NDGCQWRKYG QKISKGNPCP RAYYRCTVAP SCPVRKQVQR CAQDMSILFT  300
TYEGNHNHPL PLSATAMAST TSAAASMLLS GSSTSHSGTR PSTAMTTADL HGMNFFLSDG  360
SKLSKQYYLS HPAALSSSPS HPTITLDLTS NNNPSSSSSA ALVKFTSNSN YNNTQRYPLS  420
TSLNFSSSES NNATTSWSNN GFLSYNNTLP YNSNRNVTNV LSNINLGRQQ QQPMENIYNS  480
YMQRNNNVPI SPPQHSLPDT IAAATKVITA DPNFQSALAA ALTTIIGSGS TTQGNHGGAG  540
ENLSQKMKWG ELFPSSSSAL PSSSTKVNGC ASSFLNKSAA NTQPGTALMF LQPPLPLSSP  600
KSASGSPGDH IDKRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20237311174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2361730.0AC236173.2 Glycine max clone GM_WBb0081G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528183.10.0probable WRKY transcription factor 61
RefseqXP_028237211.10.0probable WRKY transcription factor 61
SwissprotA0A3Q7GFB51e-122WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLA0A445KBU30.0A0A445KBU3_GLYSO; Putative WRKY transcription factor 72 isoform A
TrEMBLI1KCP90.0I1KCP9_SOYBN; Uncharacterized protein
STRINGGLYMA06G20300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-65WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]