PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN19210.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 576aa    MW: 65936.6 Da    PI: 5.8022
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN19210.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.11e-772065742374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkfshlt 97 
                  + Ll++Ae v  +++e+a+ lL + +  +s +++p+qR++++f++AL++r+++++ ++  + + ++++++    +++++++    +   P+ ++ +++
  KHN19210.1 206 AQFLLAAAERVGCQQFERANGLLLHCEWSSSGSASPVQRVIFHFARALRERIYKETGRMTVKGSGKNEERELiqkMDTNISIK--CHLKIPFNQVMQFA 302
                 678***************************************************66555544444444433333233333333..44457********* PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   qaI+e v++e+++H iD++i  G+Q  aL+qaL++R+      l+iT++g ++   k ++eetg+ L++fAe+l++pf++n++ + ++++++ ++++
  KHN19210.1 303 GVQAIVEHVASETKIHLIDLEIRIGVQCTALMQALSERRdCVVQLLKITAIGLNS--LKIMIEETGKSLTSFAESLNLPFSYNAVFVADIAEIRKDHFE 399
                 ************************************999445679********55..99**************************************** PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 + ++Ea+aV + + l ++++++ ++e+    +++++++++P +++v e ea+hns+s+++rf+eal +ysa fd+le+ + +e e ++++E++ l++ i
  KHN19210.1 400 IGEDEAVAVYSPYFLRSMVSRPDCMEN----LMRIIRNIKPVIMIVLEVEANHNSPSLVNRFIEALFFYSAYFDCLETCIKHEIECKMTIEAV-LSEGI 493
                 ******************988888888....***************************************************99*******99.***** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +++va+eg+er+ r+ +   Wr+ + +  + +  +se+    a+l+ ++++ ++  ++e++ + lv gWk+ p+ s+SaWr
  KHN19210.1 494 RDIVAMEGRERTVRNVKIDVWRRFFARYRMVETGFSESSLYHAHLVAKEFAfGKFCTIEKNGKGLVVGWKGTPMHSISAWR 574
                 ***************************************************888789999999*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.192179553IPR005202Transcription factor GRAS
PfamPF035143.6E-75206574IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MEIDQFSSTD LNFKGVQVGY GSTQEDVFQG KERFSGMEFL GEIDPLPTED GKGAKLFNDQ  60
DQKQLQEPKI DNFMLEEVNF NPDMQMQPTQ LFQETTGLMK HVRVNSELVE YNKQVPPTPS  120
LASLELLRNY GSRFKRLSEQ NISTLSNIET SFDRQKMSTE EIIRVAGARY LQYSAHWNDS  180
FYIPMHPYGL DLVGFSEEEN RDIELAQFLL AAAERVGCQQ FERANGLLLH CEWSSSGSAS  240
PVQRVIFHFA RALRERIYKE TGRMTVKGSG KNEERELIQK MDTNISIKCH LKIPFNQVMQ  300
FAGVQAIVEH VASETKIHLI DLEIRIGVQC TALMQALSER RDCVVQLLKI TAIGLNSLKI  360
MIEETGKSLT SFAESLNLPF SYNAVFVADI AEIRKDHFEI GEDEAVAVYS PYFLRSMVSR  420
PDCMENLMRI IRNIKPVIMI VLEVEANHNS PSLVNRFIEA LFFYSAYFDC LETCIKHEIE  480
CKMTIEAVLS EGIRDIVAME GRERTVRNVK IDVWRRFFAR YRMVETGFSE SSLYHAHLVA  540
KEFAFGKFCT IEKNGKGLVV GWKGTPMHSI SAWRFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-2921357327378Protein SCARECROW
5b3h_A6e-2921357326377Protein SCARECROW
5b3h_D6e-2921357326377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN19210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028226318.10.0DELLA protein RGL1-like isoform X1
TrEMBLA0A0B2QD620.0A0A0B2QD62_GLYSO; DELLA protein GAI1
STRINGGLYMA03G37851.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-45RGA-like protein 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]