PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN19045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 343aa MW: 38792.2 Da PI: 7.9902 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.1e-12 | 166 | 213 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L l+P + kK++Ka++L +A++Y+k++q KHN19045.1 166 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGEAIKYLKQMQ 213 5799************************.....9*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.018 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 167 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-10 | 167 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-17 | 167 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-11 | 168 | 217 | No hit | No description |
SMART | SM00353 | 4.1E-14 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEISSIRGLP EMGIIEDPNF LHHWQLNSID TTSLTGAPFG EILQKHSFSD NSNFNPKTSM 60 ETSPTGIERP AKQLRNNSWN HNKSQQQTPE TQFASCSNLL SFVNSNYTSE LGLVKPKVEM 120 VCPKINNNTL ADMLISQGNL GNQNYLFKAS QEAKKIETRP KLSQPQDHII AERKRREKLS 180 QRFIALSALV PGLKKMDKAS VLGEAIKYLK QMQEKVSALE EEQNRKRTVE SVVIVKKSRL 240 SSDAEDSSSS ETGDTFDEAL PEIEARFYER NVLIRIHCEK NKGVIEKTIS EIEKLHLKVI 300 NSSALTFGSF ILDITIIAQM DMEFCMTVKD LVRSLRSAFS YFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 164 | 223 | 5 | 64 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 164 | 223 | 5 | 64 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 164 | 223 | 5 | 64 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 164 | 223 | 5 | 64 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 164 | 223 | 5 | 64 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 164 | 223 | 5 | 64 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 164 | 223 | 5 | 64 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 164 | 223 | 5 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 176 | ERKRRE |
2 | 172 | 177 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN19045.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF069738 | 0.0 | AF069738.1 Glycine max symbiotic ammonium transporter (SAT1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006594659.1 | 0.0 | transcription factor bHLH25 isoform X2 | ||||
Refseq | XP_028188163.1 | 0.0 | transcription factor bHLH25-like isoform X2 | ||||
Swissprot | Q9T072 | 1e-61 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A0B2QCN0 | 0.0 | A0A0B2QCN0_GLYSO; Transcription factor bHLH25 | ||||
TrEMBL | A0A445I9U0 | 0.0 | A0A445I9U0_GLYSO; Transcription factor bHLH25 isoform B | ||||
TrEMBL | I1M2J0 | 0.0 | I1M2J0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G32650.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-61 | bHLH family protein |
Publications ? help Back to Top | |||
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