PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN18938.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 29613.2 Da PI: 5.675 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 124 | 174 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd s+ + +r++lg+f+taeeAa +++a+++++g KHN18938.1 124 HYRGVRRRP-WGKYAAEIRDSSK---KgARVWLGTFDTAEEAALSYDKAALRIRG 174 8********.**********543...34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.96E-30 | 123 | 182 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-31 | 123 | 183 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-37 | 124 | 188 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 124 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-23 | 124 | 184 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-14 | 124 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-11 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-11 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDIHSNHGAT SEGILENVWA KIMSSDRADG RKGDAAECSN SWEELPNLDG REGSMEILQR 60 LPSLGRWISM GADFWEEVLE GIILPNTSNT EYSGSNNNLE IGSANETHNK VGDAVRIEKS 120 VTKHYRGVRR RPWGKYAAEI RDSSKKGARV WLGTFDTAEE AALSYDKAAL RIRGPKAYLN 180 FPLEMVANAL ACDHKAVTHL ACTCIGTKEK LINSRKRASR EREAFDDIMN EQPATKKLEC 240 MVENELGAFV FHDLGSDYLD SLLSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-29 | 123 | 185 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-29 | 123 | 185 | 4 | 66 | ATERF1 |
3gcc_A | 7e-29 | 123 | 185 | 4 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN18938.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028203559.1 | 0.0 | ethylene-responsive transcription factor ERF091-like | ||||
TrEMBL | A0A0B2QG58 | 0.0 | A0A0B2QG58_GLYSO; Ethylene-responsive transcription factor ERF091 | ||||
STRING | GLYMA15G08580.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9547 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 1e-41 | ERF family protein |
Publications ? help Back to Top | |||
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