PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18841.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 274aa    MW: 29636.5 Da    PI: 5.3848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18841.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10124168554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  KHN18841.1 124 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 168
                 99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15117178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-15121178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7124168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MANHPSQAST DDFLDQILGL STFASADASP MMLQLNSGDA ATHLAAFHAP PYQLGLSLDQ  60
GKGPFLTPED ASGSGKRFRD DAVDTRPNNV FDGQPMPTTV PTAPHLPAVR PRVRARRGQA  120
TDPHSIAERL RRERIAERIR ALQELVPSVN KTDRAAMLDE IVDYVKFLRL QVKVLSMSRI  180
GGADAVAPLV TDIPLSSVEE EGGEGRNQPA WEKCSNDGTE RQVAKLMEEN VGAAMQFLQS  240
KALCIMPVSL ASAIYQSQPS DTSSIVKPEI NPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18841.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150417e-87AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206130.10.0transcription factor UNE12-like
SwissprotO227681e-123UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0B2QB710.0A0A0B2QB71_GLYSO; Transcription factor UNE12
STRINGGLYMA10G03690.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-109bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]