PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18741.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 378aa    MW: 41045.5 Da    PI: 7.1076
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18741.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC59.94.1e-19147186144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkW    +v++g+k+CErH+hrgr+rsrk++e
  KHN18741.1 147 DPEPGRCRRTDGKKW----DVVAGQKYCERHMHRGRNRSRKPVE 186
                 79*************....9*********************987 PP
2QLQ51.92.3e-1879115137
         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 s+F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i+k
  KHN18741.1  79 SYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKK 115
                 78*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-1079115IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-1380113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.50780115IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166712.773147187IPR014977WRC domain
PfamPF088791.5E-15148186IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDFHLKQWRN QHESEEQHST KMPKLLPESH QQQQPSASAL PLFVPEPNSS KVSTLSDSTL  60
ASATMTSTTT NRLFPRMGSY FSLSQWQELE LQALIFRYML AGAAVPPELL QPIKKSLLHS  120
PHYYHPLQHY QPSALLQSGY WGRGAMDPEP GRCRRTDGKK WDVVAGQKYC ERHMHRGRNR  180
SRKPVELPTP TSAINNCGVT GVGSLGPGAS SSPICSPPLA SASFKSPFDL HLDERSSGTK  240
NEDEDHVGGD GRSGGGGGHM LRHFFDDWPR SLQDSDNVEN NAAAGRSLSI SMPGASSDVS  300
LKLSTGYGED SGPGNENVSL EAEQLQLNWA GGWASSNQVA SMGGPLAEAL RSSTSTSSPT  360
SVLHRHLPRG SETSFIST
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18741.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-62AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028225980.10.0growth-regulating factor 3-like
RefseqXP_028225981.10.0growth-regulating factor 3-like
SwissprotQ8L8A73e-80GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A445LE730.0A0A445LE73_GLYSO; Growth-regulating factor 4 isoform A
STRINGGLYMA03G35010.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.16e-75growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]