PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN18737.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 524aa MW: 60067.4 Da PI: 6.7894

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN18737.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.5	5.1e-30	63	148	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs++m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea KHN18737.1 63 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRNMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 148 8***********************************999*************************98..55667*****85 PP
2	trihelix	51	3.9e-16	367	450	2	84
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W+++e+ L ++r eme+r+ + g +++ Wee++ km+ g+ers+ kekwe+++ y + ++ +k+++e+s++c yfd+ KHN18737.1 367 WPESEIARLRQLRAEMETRYMQsGFSEEVMWEEIATKMACFGYERSALVFKEKWESISSNYARSAKDGSKKRKEDSRSCFYFDN 450 *****************997256899*****************************999888888889*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.294	56	121	IPR017877	Myb-like domain
SMART	SM00717	0.12	60	123	IPR001005	SANT/Myb domain
CDD	cd12203	3.98E-20	63	128	No hit	No description
Pfam	PF13837	1.4E-20	63	149	No hit	No description
SMART	SM00717	14	363	426	IPR001005	SANT/Myb domain
Pfam	PF13837	2.1E-10	365	452	No hit	No description
PROSITE profile	PS50090	5.575	366	424	IPR017877	Myb-like domain
CDD	cd12203	4.21E-15	367	430	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MMMFGRQVAD IIPRCLHDFA PTDSATNIAV ATPTTTTSAS TPPLSCLEAE TAGCIGGDAS 60 TGRWPRQETL TLLEIRSRLD SKFKEANQKG PLWDEVSRNM SEEHGYQRSG KKCREKFENL 120 YKYYKKTKEG KAGRQDGKHY RFFRQLEALY GENSNQASVP ETNFGSGSLR FHTSSHNNNP 180 SQTNQEMFQS QKHCDSLSLT NSTDLDTSSS DDNDQNSTGR ELNKDNDSME KRRKRVSGRS 240 WKVKIKDFID SQMRKLVEKQ EEWLDKLTKT LEQKEKERVL REEEWRRQES VRLEREHKFW 300 AKERAWIEAR DAALMEALHK LTRNEIMKST HSHEGLMVTG IQIHSENQNE DGSEILNSTA 360 ARGAESWPES EIARLRQLRA EMETRYMQSG FSEEVMWEEI ATKMACFGYE RSALVFKEKW 420 ESISSNYARS AKDGSKKRKE DSRSCFYFDN SDQSSLYNQG GAYCDINDQR HETGRLQTND 480 GSSPSNSNVG NAVAGDNCFP FLMTEGGNLW ENYSLKVNKA CQNQ

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MMMFGRQVAD IIPRCLHDFA PTDSATNIAV ATPTTTTSAS TPPLSCLEAE TAGCIGGDAS  60
TGRWPRQETL TLLEIRSRLD SKFKEANQKG PLWDEVSRNM SEEHGYQRSG KKCREKFENL  120
YKYYKKTKEG KAGRQDGKHY RFFRQLEALY GENSNQASVP ETNFGSGSLR FHTSSHNNNP  180
SQTNQEMFQS QKHCDSLSLT NSTDLDTSSS DDNDQNSTGR ELNKDNDSME KRRKRVSGRS  240
WKVKIKDFID SQMRKLVEKQ EEWLDKLTKT LEQKEKERVL REEEWRRQES VRLEREHKFW  300
AKERAWIEAR DAALMEALHK LTRNEIMKST HSHEGLMVTG IQIHSENQNE DGSEILNSTA  360
ARGAESWPES EIARLRQLRA EMETRYMQSG FSEEVMWEEI ATKMACFGYE RSALVFKEKW  420
ESISSNYARS AKDGSKKRKE DSRSCFYFDN SDQSSLYNQG GAYCDINDQR HETGRLQTND  480
GSSPSNSNVG NAVAGDNCFP FLMTEGGNLW ENYSLKVNKA CQNQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN18737.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028225975.1	0.0	trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-136	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A445LE46	0.0	A0A445LE46_GLYSO; Trihelix transcription factor PTL
STRING	GLYMA03G34960.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-127	Trihelix family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]