PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN18668.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 347aa MW: 39632.7 Da PI: 7.2637 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.4e-12 | 44 | 100 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g KHN18668.1 44 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 100 57*******************99998898888888********************98 PP | |||||||
2 | AP2 | 50.7 | 4.6e-16 | 143 | 194 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g KHN18668.1 143 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 194 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-15 | 44 | 110 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-8 | 44 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-20 | 45 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-13 | 45 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.821 | 45 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 46 | 57 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-17 | 143 | 204 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-11 | 143 | 194 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.32E-23 | 143 | 204 | No hit | No description |
SMART | SM00380 | 2.7E-25 | 144 | 208 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.307 | 144 | 202 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-17 | 144 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 184 | 204 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 347 aa Download sequence Send to blast |
MAKQQTHKIN ASTNNNISTT NTVTAKVKRT RRSVPRDSPP QRSSIYRGVT RHRWTGRYEA 60 HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLS TYQNELKEME 120 GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE 180 AATAYDMAAI EYRGVNAVTN FDLSRYIKWL KPNNNNTTVN SNLIDSNPNC ETNFTSNSNQ 240 QQGFNFFNRQ ESFNNEEAAM TQPRPAVATS ALGLLLQSSK FKEMMEMTSA TDLSTPPSES 300 ELPSCTFPDD IQTYFECEDS HRYGEGDDIM FSVLNGFVPP MFHCDDF |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN18668.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC235168 | 0.0 | AC235168.1 Glycine max strain Williams 82 clone GM_WBb0001B19, complete sequence. | |||
GenBank | AC235416 | 0.0 | AC235416.1 Glycine max strain Williams 82 clone GM_WBb0132F05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006579217.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_028227058.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-114 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0B2QFB9 | 0.0 | A0A0B2QFB9_GLYSO; AP2-like ethylene-responsive transcription factor | ||||
TrEMBL | K7KK62 | 0.0 | K7KK62_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G24010.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G16060.1 | 9e-95 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
---|---|---|---|
|