PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN18657.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 908aa MW: 100423 Da PI: 7.3213 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63 | 4.9e-20 | 336 | 436 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvl+ sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W++++++ +++s++yvl+ G +a +L++gD+v+F++++ +++lv++ KHN18657.1 336 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGVPLRMQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLCAGDTVTFSRID-PGGKLVMG 432 99**************************666778999***************9989999999***9.********************887.78888888 PP EE-S CS B3 96 vfrk 99 ++++ KHN18657.1 433 FRKA 436 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-30 | 332 | 443 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.27E-20 | 334 | 436 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.97E-23 | 334 | 435 | No hit | No description |
PROSITE profile | PS50863 | 10.532 | 336 | 437 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-16 | 336 | 435 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.5E-23 | 336 | 437 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.181 | 597 | 647 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 2.3E-9 | 602 | 644 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 908 aa Download sequence Send to blast |
MGSDICVVNG SCTHEWRKGW PLRSGGFAQL CCKCGFMEEW KGDILDPLSA YENSVFCNKF 60 HCQQTGWREC NFCNKPIHCG CIVSRSLFEY LDFGGIGCVS CVNTTQLSMM RNMENPNVTV 120 LSIKNNAGDR HSAHFDGRLL VGGVDEGKLM QFCKIIEASE SSRWNHAQRD GIIAHRGQKN 180 QEAKSSFREV EIGFSNVMNP SVQSLTFATL ENNRSTWEIK NMHESNTKPS LSMYLGNASG 240 NNSVPPSAGE AVEGRLDGKT SPPFQGSRSI FPKPLKNGLT MNMETNKGTM SQSRVARPPA 300 DGRGKNQLLP RYWPRITDEE LERLAGDLKS TVVPLFEKVL SASDAGRIGR LVLPKACAEA 360 YFPPISQSEG VPLRMQDVKG NEWTFQFRFW PNNNSRMYVL EGVTPCIQAM QLCAGDTVTF 420 SRIDPGGKLV MGFRKASNST DTQDASTSAQ SNLAKGTVSS GTENLPSGSN NADLLHSLTG 480 NVECHLNGHT EHLHLGTGTA GLLKTENNEM TNSSSPQQQI SVLEKKRTRN IGPKSKRLLI 540 DNEDAMELKL TWEEAQDLLR PPPSVKPSIV TIEDQVIEEY DEPPVFGKRT IFSACSSGGK 600 EQWAQCDDCS KWRKLPVDAL LPPKWTCCEN VWDSSRCSCS APEELSSREI ENLLKNNKDF 660 KKRRIVESSK SIQEHEPSGL DALASAAVLG ENLIDTAESS AGVTTKHPRH RPGCSCIVCI 720 QPPSGKGRHK PTCTCNVCMT VKRRFKTLML RKKKRQSERE ADAAQKDQTL PKDELDTNGA 780 SRDDTSQLEK EAGLKSQHEV GGSSAGQIDL NSHPNREDMQ VETTGLNMSS HLEPATNHTV 840 GEFMNQNGLR NFNNEVQTGQ NSSLHTPKSN GEGQRYFSDG RCFASIMWNQ ERKDEVHSQT 900 NQSQNNLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 7e-69 | 314 | 443 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 741 | 752 | KRRFKTLMLRKK |
2 | 741 | 754 | KRRFKTLMLRKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN18657.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028214064.1 | 0.0 | B3 domain-containing transcription repressor VAL1 isoform X3 | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A0B2QFV3 | 0.0 | A0A0B2QFV3_GLYSO; B3 domain-containing transcription repressor VAL1 | ||||
STRING | GLYMA18G05840.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10323 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |