PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN18389.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 567aa MW: 62601.7 Da PI: 9.3419

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN18389.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.8	1.1e-14	266	316	2	55
HHHHHHHHHHHHHHHHHH.HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa.feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++ f+ Lrel+P++ ++K +Ka+ L ++veYI+ Lq KHN18389.1 266 RSKHSATEQRRRSKINDRqFQMLRELIPHS----DQKRDKASFLLEVVEYIHFLQ 316 889***********9768*****9....9****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-21	261	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-15	262	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.798	264	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.51E-13	266	320	No hit	No description
Pfam	PF00010	3.0E-12	266	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.3E-11	270	321	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MELPQARPLG TEGRKPMHDF LSLYSNSTAQ QDPRLPSQGS YLKTHDFLQP LERVETKACA 60 KEEATEEILS VVQKQRPPSV EHLLPGGIGT YSISHISYVN NNNNQRGVLK PETSSLFVRQ 120 ATSTDKNEEN SNCSSYTSSG FTLWEESSGK RGNTGKENNA GEKPSLGVTE SAAKLGQWTS 180 TERTSQSFSN NRHGGFSSRS SSQTTGQKNQ SFIEMMKSAR DSNAQDEVLE SEETFFLKKE 240 PSSNTQRELR VKVDAKSTDQ KPNTPRSKHS ATEQRRRSKI NDRQFQMLRE LIPHSDQKRD 300 KASFLLEVVE YIHFLQEKVH KYEGSFQGWS NEPEKLMPWR NNDKPAETFQ PRGTDNGSSP 360 SPTLLFASKV DEKNITISQT IPGSTQNVES GLSSATTPKT MDHHAGMMNK AFPIPIPSQL 420 NFFTPTQIGG PGGVVSQLTH RSASDAEKTK YQPSVECQTM TATNEKLKEK ELTIEGGAIS 480 ISSVYSKGLL HTLTHALQSS GVDLSQASIS VQIELGKQAN IRPSVPVSVC AAKDGDVHSN 540 NQKMMRSRVA SSGKSDQAVK KLKTCRS

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MELPQARPLG TEGRKPMHDF LSLYSNSTAQ QDPRLPSQGS YLKTHDFLQP LERVETKACA  60
KEEATEEILS VVQKQRPPSV EHLLPGGIGT YSISHISYVN NNNNQRGVLK PETSSLFVRQ  120
ATSTDKNEEN SNCSSYTSSG FTLWEESSGK RGNTGKENNA GEKPSLGVTE SAAKLGQWTS  180
TERTSQSFSN NRHGGFSSRS SSQTTGQKNQ SFIEMMKSAR DSNAQDEVLE SEETFFLKKE  240
PSSNTQRELR VKVDAKSTDQ KPNTPRSKHS ATEQRRRSKI NDRQFQMLRE LIPHSDQKRD  300
KASFLLEVVE YIHFLQEKVH KYEGSFQGWS NEPEKLMPWR NNDKPAETFQ PRGTDNGSSP  360
SPTLLFASKV DEKNITISQT IPGSTQNVES GLSSATTPKT MDHHAGMMNK AFPIPIPSQL  420
NFFTPTQIGG PGGVVSQLTH RSASDAEKTK YQPSVECQTM TATNEKLKEK ELTIEGGAIS  480
ISSVYSKGLL HTLTHALQSS GVDLSQASIS VQIELGKQAN IRPSVPVSVC AAKDGDVHSN  540
NQKMMRSRVA SSGKSDQAVK KLKTCRS

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN18389.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-128	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003549583.1	0.0	transcription factor BIM1 isoform X2
Refseq	XP_028211016.1	0.0	transcription factor BIM1-like
Swissprot	Q9LEZ3	1e-121	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A445G3X1	0.0	A0A445G3X1_GLYSO; Transcription factor BIM1 isoform A
TrEMBL	I1MT98	0.0	I1MT98_SOYBN; Uncharacterized protein
STRING	GLYMA17G08980.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7252	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-123	bHLH family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]