PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN18377.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 394aa MW: 44296.1 Da PI: 9.0654 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.9 | 1.3e-42 | 167 | 242 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls++k+yh+rhkvCevhsk++ v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q KHN18377.1 167 CQVYGCNKDLSSCKDYHKRHKVCEVHSKTAIVIVDGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 242 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.4E-33 | 161 | 228 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.573 | 164 | 241 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.16E-39 | 165 | 244 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-31 | 167 | 240 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MESWSYIPEE KECVSNEAPS PPNTLGRSKN SFLGWELKTP CGFSTDMLGL GHHSIENQGF 60 EELGFPEMLG KHMSDDLVAS VPTRKVDGNR QQQQHHSDRI TGTVVDAPSG FSQRGDSNSL 120 IDLKLGRFAE HGDFTDPAFS KVLSSSESST PPKRVRTSGL HSQTAYCQVY GCNKDLSSCK 180 DYHKRHKVCE VHSKTAIVIV DGIEQRFCQQ CSRFHLLAEF DDGKRSCRKR LAGHNERRRK 240 PQMGIHPGKS GTLLQPCGDS RFQGSMLTSS FIRPEMLPSG VMCSEKYGMS DFWRPIKAEH 300 GTGFRNLSSM AATNGHPLPR SLFSSYNGKQ FPFLHENSHG DKVKERDIVA NFPFVKKLVV 360 KHVKDTPMPI ILRQCRPQGN RNFKWCHSVA NYLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-29 | 167 | 240 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN18377.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF220978 | 0.0 | KF220978.1 Glycine max cultivar Williams 82K clone 6f7r squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (Glyma17g08840) gene, partial cds. | |||
GenBank | KF220979 | 0.0 | KF220979.1 Glycine max cultivar Sowon clone 6f7r squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (Glyma17g08840) gene, partial cds. | |||
GenBank | KF220980 | 0.0 | KF220980.1 Glycine max cultivar Pureun clone 6f7r squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (Glyma17g08840) gene, partial cds. | |||
GenBank | KF220981 | 0.0 | KF220981.1 Glycine max cultivar Kwangkyo clone 6f7r squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (Glyma17g08840) gene, partial cds. | |||
GenBank | KF220982 | 0.0 | KF220982.1 Glycine max cultivar Ilpumgeomjeong clone 6f7r squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (Glyma17g08840) gene, partial cds. | |||
GenBank | KF220983 | 0.0 | KF220983.1 Glycine max cultivar Seoritae clone 6f7r squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (Glyma17g08840) gene, partial cds. | |||
GenBank | KF220984 | 0.0 | KF220984.1 Glycine max cultivar PI96983 clone 6f7r squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (Glyma17g08840) gene, partial cds. | |||
GenBank | KF220985 | 0.0 | KF220985.1 Glycine max cultivar Haman clone 6f7r squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (Glyma17g08840) gene, partial cds. | |||
GenBank | KF220986 | 0.0 | KF220986.1 Glycine max cultivar Geomjeongol clone 6f7r squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (Glyma17g08840) gene, partial cds. | |||
GenBank | KF220987 | 0.0 | KF220987.1 Glycine max cultivar Hwangkeum clone 6f7r squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (Glyma17g08840) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006600599.1 | 0.0 | teosinte glume architecture 1 | ||||
Refseq | XP_028211731.1 | 0.0 | teosinte glume architecture 1-like | ||||
TrEMBL | A0A445G3T7 | 0.0 | A0A445G3T7_GLYSO; Squamosa promoter-binding-like protein 6 isoform A | ||||
TrEMBL | K7MKJ4 | 0.0 | K7MKJ4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G08840.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-54 | SBP family protein |
Publications ? help Back to Top | |||
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