PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN18250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 219aa MW: 24816.3 Da PI: 8.3635 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85 | 1.2e-26 | 48 | 137 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k e+++r++ r gCka++ vk+ek+gkw vt+++++HnH+l KHN18250.1 48 KFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNNKGILGPEKKPRPSAREGCKATILVKLEKSGKWIVTRFVKDHNHPLI 137 6********************************************999****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-24 | 48 | 137 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDSVVVDSDK GNEAEHSCLE ESISIFGGVE VQEPYVGMEF GSEEDARKFY VDYARRVGFV 60 VRIMQRRRSG IDGRTLARRL GCNKQGFSPN NKGILGPEKK PRPSAREGCK ATILVKLEKS 120 GKWIVTRFVK DHNHPLIATA NGFSTAGDKD KKIVELTMEL ERQDQLCAAY REKLLSFISN 180 VEEETEELST KIQLIIENVR RAESDMKKCS QNRKPWCLT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN18250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206718.1 | 1e-151 | protein FAR1-RELATED SEQUENCE 7 isoform X1 | ||||
TrEMBL | A0A0B2QAJ6 | 1e-161 | A0A0B2QAJ6_GLYSO; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | GLYMA18G24443.1 | 1e-161 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 6e-76 | FAR1 family protein |
Publications ? help Back to Top | |||
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