PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18189.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 521aa    MW: 57351.5 Da    PI: 7.8824
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18189.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.76.5e-1565103241
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                 ++k+CnCk+s+Clk+YCeCfaag +C+  C+C +C+N+ +
  KHN18189.1  65 KQKQCNCKNSRCLKLYCECFAAGIYCDG-CNCVNCHNNVD 103
                 89**************************.********986 PP
2TCR51.12.6e-16147186140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  KHN18189.1 147 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 186
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-1864104IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.75365187IPR005172CRC domain
PfamPF036385.9E-1266101IPR005172CRC domain
SMARTSM011148.4E-20147188IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.7E-13150185IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MEQSETASDL APRKLVRQLN FAAVYGDPSH LKLPPPLPPP QSPKPKSPRS QPQCNVELKD  60
TTPKKQKQCN CKNSRCLKLY CECFAAGIYC DGCNCVNCHN NVDNEAARQE AVGITLERNP  120
NAFRPKIASS PLERRDSKEC EIQVIGKHNK GCHCKKSGCL KKYCECFQAN ILCSENCKCM  180
DCKNFEGSDE RRAIFHKDYN LVHIKQAANA TISRVAGSSG YGTHLTPKKR KIHEMFPGKS  240
AMDQTDNITA QYQQEIDPMA SSPSFLSDSF VSDPSNTRIS ASSRSTYRSV LADFFQPQNV  300
KNLCSLFVVL SQVAAKTNAE MIGKVDQQTK TGNFEASVAS SSKSLQETRD VHQLVCDDHV  360
NKDEADAVDI ANYNRPLSPE TLALMCDEQD DMIFGNSSAN GVACNSTLQN MIQKSSNSDG  420
CTDVCREQER LILTKFLDVL RGLVTHGSIK ETMCSSSTKK GERSKKEPAD NANIGAETNV  480
GREKGIHNNS FGNYLIPSVT KISQTNYAVT NGHGNNDLSL T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-30571962132Protein lin-54 homolog
5fd3_B3e-30571962132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN18189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581438.10.0protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_028235489.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A0B2QDV50.0A0A0B2QDV5_GLYSO; Protein lin-54
STRINGGLYMA06G08774.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151511113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-106Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]