PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN18030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 91aa MW: 10157.4 Da PI: 8.9968 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 60.4 | 4.5e-19 | 48 | 91 | 1 | 44 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-T CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCq 44 +Cq+egC+adls+ak+yh+rhkvCe+hska++++++gl+qr Cq KHN18030.1 48 RCQAEGCNADLSQAKHYHHRHKVCEFHSKAATIIAAGLTQRLCQ 91 6******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-20 | 44 | 91 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 17.136 | 46 | 91 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.23E-18 | 47 | 91 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-13 | 49 | 91 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MDFVGSRIGL NMGGRTYFSS SEDDFVSRLY RRSRPVEPGS TILSNSPRCQ AEGCNADLSQ 60 AKHYHHRHKV CEFHSKAATI IAAGLTQRLC Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 3e-13 | 49 | 91 | 6 | 48 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN18030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530168.1 | 3e-57 | squamosa promoter-binding-like protein 8 | ||||
Refseq | XP_028240023.1 | 3e-57 | squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 1e-44 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A0B2Q9S8 | 4e-62 | A0A0B2Q9S8_GLYSO; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A445GGQ0 | 4e-61 | A0A445GGQ0_GLYSO; Squamosa promoter-binding-like protein 8 | ||||
STRING | GLYMA16G19464.1 | 2e-62 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6801 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 4e-48 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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