PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN17790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 335aa MW: 36614.9 Da PI: 7.7756 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.8 | 2.2e-28 | 127 | 185 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK kg+++pr+YYrC + Cpv+k+v+r++ed++vv++tYeg+Hnh+ KHN17790.1 127 GDGCQWRKYGQKISKGNPCPRAYYRCNMGtACPVRKQVQRCSEDESVVITTYEGNHNHS 185 69**************************98****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-31 | 111 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-26 | 119 | 187 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.264 | 121 | 187 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-32 | 126 | 186 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.2E-25 | 128 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEGKVALKKL LEVQKKAHVN STDALNWTEE PSIKNTLGST LLSLSLNNLE PPQNHEQQHL 60 NQRDSRQEDM EKPVLSSCSQ FLNTEGKFNK QVTTSQEAKT IEEQAFEASC KKARVSVRAR 120 SESSLMGDGC QWRKYGQKIS KGNPCPRAYY RCNMGTACPV RKQVQRCSED ESVVITTYEG 180 NHNHSLPPAA KSMASTTSAA LKMFLSGSTS SSHGSTYSYS NSDLFSPLFT STYYPSASSS 240 CPTINLDFTQ TSKDNLKFPS VISSNHLQPF PLSLHGQPQQ SEGILPSEKN LALVDVVSAA 300 ITNDPSLKAA LEAAVSSIIG DSQNINNHSQ SLPTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-21 | 117 | 187 | 8 | 77 | Probable WRKY transcription factor 4 |
2ayd_A | 5e-21 | 113 | 189 | 1 | 76 | WRKY transcription factor 1 |
2lex_A | 4e-21 | 117 | 187 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN17790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 2e-32 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550582.1 | 0.0 | WRKY transcription factor 6 isoform X1 | ||||
Refseq | XP_028211045.1 | 0.0 | WRKY transcription factor 6-like isoform X1 | ||||
TrEMBL | A0A445G1Q5 | 0.0 | A0A445G1Q5_GLYSO; WRKY transcription factor 42 isoform A | ||||
TrEMBL | I1MS01 | 0.0 | I1MS01_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G04710.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13945 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 8e-41 | WRKY family protein |
Publications ? help Back to Top | |||
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