PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN17714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRF | ||||||||
Protein Properties | Length: 376aa MW: 42573.1 Da PI: 8.0762 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.8 | 1.1e-24 | 75 | 118 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e KHN17714.1 75 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118 79***************************************987 PP | |||||||
2 | QLQ | 56.8 | 6.9e-20 | 12 | 46 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT++Q+q+L++Q+l+yKy+a++ +Pp+Ll+ i+ KHN17714.1 12 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 46 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-11 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.0E-15 | 12 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.36 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 75 | 119 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-20 | 76 | 118 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MNGRNVDTNR FPFTPSQWQE LEHQALIYKY MASGISIPPD LLFTIKRTTH LDSSRLLPQH 60 FGWNYLPMGL GRKIDPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKPVEVL 120 KTTPMTAATN TDASTPTTIL SITKNSPVLF PTTHSLSHDT YHHHHHHHSH PQQHSSHSFL 180 YHSSRPSSGG VSLSFQDNSA PLFLDTASCS QNNNNTDCRY VYGLKEEVDE HAFFTEPSGT 240 MRSFSASSME DSWQLTPLTI SSSSSSKQRS CSGLSNDSNE YSYLQLQSLS GNNSKHPQQD 300 QGCYISGSDI KCETFMKLGK EEPQKTVHRF FDEWPPKSRG SWLDLDDKSS TTQLSISIPT 360 STHDFATFSS TTQRDG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN17714.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003551131.2 | 0.0 | growth-regulating factor 1 | ||||
Refseq | XP_028210022.1 | 0.0 | growth-regulating factor 1-like | ||||
TrEMBL | A0A445G2K5 | 0.0 | A0A445G2K5_GLYSO; Growth-regulating factor 4 | ||||
TrEMBL | K7MK10 | 0.0 | K7MK10_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G05800.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-52 | growth-regulating factor 5 |