PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17714.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 376aa    MW: 42573.1 Da    PI: 8.0762
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17714.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81.1e-2475118144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  KHN17714.1  75 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 118
                 79***************************************987 PP
2QLQ56.86.9e-201246236
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  KHN17714.1 12 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 46
                8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-111147IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.0E-151245IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.361247IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9875119IPR014977WRC domain
PfamPF088791.3E-2076118IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MNGRNVDTNR FPFTPSQWQE LEHQALIYKY MASGISIPPD LLFTIKRTTH LDSSRLLPQH  60
FGWNYLPMGL GRKIDPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKPVEVL  120
KTTPMTAATN TDASTPTTIL SITKNSPVLF PTTHSLSHDT YHHHHHHHSH PQQHSSHSFL  180
YHSSRPSSGG VSLSFQDNSA PLFLDTASCS QNNNNTDCRY VYGLKEEVDE HAFFTEPSGT  240
MRSFSASSME DSWQLTPLTI SSSSSSKQRS CSGLSNDSNE YSYLQLQSLS GNNSKHPQQD  300
QGCYISGSDI KCETFMKLGK EEPQKTVHRF FDEWPPKSRG SWLDLDDKSS TTQLSISIPT  360
STHDFATFSS TTQRDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN17714.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551131.20.0growth-regulating factor 1
RefseqXP_028210022.10.0growth-regulating factor 1-like
TrEMBLA0A445G2K50.0A0A445G2K5_GLYSO; Growth-regulating factor 4
TrEMBLK7MK100.0K7MK10_SOYBN; Uncharacterized protein
STRINGGLYMA17G05800.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-52growth-regulating factor 5