PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN17671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 599aa MW: 67008.7 Da PI: 7.0574 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.1 | 2.2e-06 | 319 | 333 | 12 | 26 |
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G C++G++C+F H+ KHN17671.1 319 SGSCPRGEKCNFQHD 333 7*************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd07380 | 2.92E-48 | 6 | 230 | No hit | No description |
SMART | SM00356 | 0.0053 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 310 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-6 | 311 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.31 | 312 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-4 | 312 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 341 | 366 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 344 | 368 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.413 | 344 | 367 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04677 | 7.5E-37 | 382 | 493 | IPR006768 | Cwf19-like, C-terminal domain-1 |
SuperFamily | SSF54197 | 1.06E-6 | 384 | 452 | IPR011146 | HIT-like domain |
Gene3D | G3DSA:3.30.428.10 | 2.9E-4 | 385 | 448 | IPR011146 | HIT-like domain |
Pfam | PF04676 | 1.5E-16 | 510 | 596 | IPR006767 | Cwf19-like protein, C-terminal domain-2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 599 aa Download sequence Send to blast |
MAPRILLCGD VLGRLNQLFK RVSSVNKSAG PFDALLCVGQ FFPDSPEQLE DFTKYIEGGS 60 HFPLPTYFIG DYGVAAPKLL LQASKDSANQ GFKMDGFKVC HNLYWLKGSG KFPLFGLSVA 120 YLSGRKSSSG QQFGNYTEDD VDALRAIAEE PGVVDLFLTN EWPNGVTNRA ADSDIPAGLS 180 DGSDSTVSEL VQEIKPRYHI AGTKGIYYAR EPYSNVDAVH VTRFIGLASV GNRDKQKFIH 240 AISPTPASTM SSTEIAMKTT NTTLSPYTFK EKRTSPMDSA KRSSDSISDP QYWRYDVAQK 300 RQKHEAGHGD KLCFKFVSSG SCPRGEKCNF QHDTDAREQC MRGVCFDFLN KGKCERGPDC 360 NFKHSLQDEG NRLPSRRPGS GRSKECWFCL SSPNVESHLI ISIGENYYLA LAKGPLVEDH 420 VLIIPVEHMP STLSMPPESE IELSRFQNSL RSYCKSQEKE FIFFEWVSIR GTHANLQAIP 480 IPSSKAIMVE KVFNLAAQKL GFEFVAKKFD SISDGRKFLK TQIDGDSSLF YAQIPGGTIL 540 LHHVEEKEKF PAQFGREVLA GLLNMADNAD WRNRKHSKDE EKEIVEDFKS RFQEYDPNC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN17671.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-139 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028208250.1 | 0.0 | zinc finger CCCH domain-containing protein 64-like | ||||
Swissprot | Q84WU9 | 0.0 | C3H64_ARATH; Zinc finger CCCH domain-containing protein 64 | ||||
TrEMBL | A0A445G2G4 | 0.0 | A0A445G2G4_GLYSO; Zinc finger CCCH domain-containing protein 64 isoform A | ||||
STRING | GLYMA13G16390.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7132 | 19 | 23 |
Publications ? help Back to Top | |||
---|---|---|---|
|