PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN17667.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 322aa MW: 36170.6 Da PI: 10.0343 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.8 | 1.7e-19 | 184 | 217 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + KHN17667.1 184 CSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKAR 217 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.38E-13 | 176 | 218 | No hit | No description |
PROSITE profile | PS50114 | 12.782 | 178 | 214 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.7E-21 | 178 | 229 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-15 | 182 | 217 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.89E-15 | 183 | 215 | No hit | No description |
Pfam | PF00320 | 3.2E-17 | 184 | 217 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 184 | 209 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MIPAYRHSVS SVMPLDLNED QNHEFFSPTH HPSSSFSSLS SYPILFNPPN QDQEARSYYW 60 EPTKQYLPSH EEETEKIIPS SGSWDHSVAE SEHNKATVWK KAEERNENLE SVAAEDGSLK 120 WMPAKMRIMR KMLVSDQTDT YTNSDNNTTH KFDDQKQQLS SPLGTDNSSS NNYSNHSNNT 180 VRVCSDCHTT KTPLWRSGPR GPKSLCNACG IRQRKARRAM AAAAASASGN GTVIVEAKKS 240 VKGRNKLQKK KEKKTRTEGA AQMKKKRKLG VGSAKASQSR NKFGFEDLTL RLRKNLAMHQ 300 VFPQDEKEAA ILLMALSYGL VH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 248 | 267 | KKKEKKTRTEGAAQMKKKRK |
2 | 263 | 268 | KKKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN17667.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550634.1 | 0.0 | GATA transcription factor 21 isoform X1 | ||||
Refseq | XP_028209244.1 | 0.0 | GATA transcription factor 21-like isoform X1 | ||||
TrEMBL | A0A445G2E7 | 0.0 | A0A445G2E7_GLYSO; Putative GATA transcription factor 22 | ||||
TrEMBL | I1MSH4 | 0.0 | I1MSH4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G06290.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1992 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 1e-32 | cytokinin-responsive gata factor 1 |
Publications ? help Back to Top | |||
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